Geotrypetes seraphini (Gaboon caecilian): 117357428
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Entry
117357428 CDS
T09159
Symbol
SYNPO2
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117357428 (SYNPO2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
gsh04990
]
117357428 (SYNPO2)
Domain-containing proteins not elsewhere classified [BR:
gsh04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
117357428 (SYNPO2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
Calsarcin
PDZ_2
GxDLY
Motif
Other DBs
NCBI-GeneID:
117357428
NCBI-ProteinID:
XP_033793899
UniProt:
A0A6P8QC31
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Position
1:126110688..126306432
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AA seq
1185 aa
AA seq
DB search
MGTGDYICITMNGGAPWGFRLQGGKEHKQPLQVSKVLDNSKARSAGLFEGDEVVAINGQP
CADLLQAQIIMLINSRTDALQMLIKRSASGRNGAPLPGTEARTYGTVDREDYKTCSMLER
KPYLEPASVSECSGKVENGTGLQRRRHAQKVTECYRITPKVIEGPKAEASVHGVHLHVDF
AHDGGKSISSAERHHPSGAENGSVGNKGSAVVPVRAEAETPSLPRVQVILGCSDRDKEVS
WALPAKGSAESQVEGGGGQAQAPPPETLSAVCSEGSQQEIGDQLHSAWDSSRPHKHRARH
ARLRRSESLSEKQLKEAKSKCKSIALLLTAAPNPTSKGVLMFKKRRQRAKKYTLISYGTG
ELEKDEAEEEEGDEGVEGNKDQAFQVTLFGGSESDIDDDFYSDPEDETQIVKFDWDSNLL
EVERKLKSGDQMESLPETKGKGVMMFARRKQRMDQIAAEQEEMKSMRIPMDEPREATTAE
SVQNVLSYQAQQSSTSKPQTCVSKSYIEVSHNYGRMANGIGGEQEMAAAVQSAALNRTAK
PFSAVQNRAAAPFSPTRSVTSPLSDLPAPPPYSSISPPPIPLYKMTSPVAGTAPPLVWSP
SESMEQIASRDERIAVPVKKTGILQDAKKRSTAKPMFTFKESPKLSPNPALLSLVQNQEG
KKGPGAGNESGPEEDYLSLGAEACNFMHIQAAKQKTPPPVAPKPAVKASPTAVTPVSPAV
ASTQPPVFPNQNISEDNAPVPVSSAHHIHHYYQPPSTLNLTGPFKGAQTVAAAAANQRHT
PKTPPGNGRTAYEMPALKGRGAELFAKRQSRMEKYVVDSSTVQANKVRSSSPTPSLPPSW
KYSSNVRAPPPVAYNPIQSPMYPLAASKSQPKSMAAKKSTKKKPTKTLDALDVMKHQPYQ
LNASLFSFQPPSEAKEDVIPQHSPKVDGPASLKRAQPSKPISDGSHTNFRASSVYSVPAY
SSQPSFLSTPANESYESVEYPVVSKQEPMASSMIPPPRPKFSAKKVGVTAQDMDGRRSAP
GFLQRTMSVTSPAQFHPAPGYSAQISDPLGRRLSPWEAAAKSPLGLVDDAFAPRNIQESI
AANVVSAARRKTLPEPPEAWKQRVSYAAPSTFSSVGLGVRRQPGVVSPPRSSVSAPSASL
QWRHPYRGQHSLTYPGMARMETRPENFLSFLPDSNYNPYPRAWRH
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgggaaccggggattatatttgcatcacaatgaatggaggggcaccttggggatttagg
ctgcaaggtgggaaggagcacaagcagcctttgcaagtttccaaggtgttggacaacagc
aaagccaggagtgcagggttgttcgagggtgatgaggtggtggctatcaatggccagcct
tgtgcggacctcctgcaggcgcagatcatcatgctcatcaacagcagaacagatgctctc
cagatgctgattaagagatcagccagtggaagaaatggggctcctttacccggcacagag
gctagaacctatgggactgtggaccgagaggattacaagacatgcagcatgctggaaagg
aagccttatctagagccagcttccgtctctgagtgcagtggaaaggtggagaatggcact
ggccttcagaggagaagacatgcacagaaggtgacagagtgctacagaattacacctaaa
gtcattgaaggtcccaaggcagaggcttctgttcatggggtgcatctgcatgtagacttt
gcacatgatggagggaaaagcatcagttctgcagagagacatcacccttcaggagctgaa
aatggttctgtcggtaacaaagggtcagcagtggtccctgtcagagcggaggctgagacg
ccatctctgccccgagtacaagtcatcctgggctgttccgatagggataaggaagtgtcc
tgggctctgcctgccaaggggagtgctgaatctcaagtggaaggaggcggggggcaggca
caagcacctcctccagaaaccctctctgcagtttgctcagagggcagtcagcaggagata
ggagaccagctgcactcagcctgggattccagcagacctcacaagcaccgagccagacac
gcaaggctccggcgcagtgagagcctatcagaaaagcagctgaaggaagcgaagtctaaa
tgcaagagcatcgccctactgctgacggcagcccccaacccaacttccaagggggtgctg
atgtttaagaagcgtcgccagagggccaagaaatacactttaattagctacggcactggg
gagctagagaaagacgaagctgaggaagaggagggagacgaaggtgtggaaggtaataaa
gaccaggcttttcaggtgactctgtttggaggaagtgagtctgacattgatgacgatttc
tactctgatcctgaggacgaaacccagattgtaaagtttgattgggacagcaatttgcta
gaggttgaaagaaaactaaaaagtggagaccagatggagagccttccagaaacgaagggc
aaaggggtgatgatgtttgccagaagaaaacagagaatggatcagattgcagcagaacaa
gaggagatgaaaagcatgaggatacccatggacgagccacgagaagccactacggcagaa
agtgtccaaaacgtcttatcttatcaggcacaacagagtagcacatcaaaaccccagacc
tgtgtgagcaagagctatatagaagtaagccacaactatgggaggatggcaaatggaatt
ggtggggagcaggagatggctgccgctgtgcaatcagctgcattaaacagaacagccaag
ccattctcggcagtgcagaatcgggcagcagcaccattttctcctaccagaagtgtgact
agccctctctcagacctgcctgcaccccctccttactcctctatcagcccaccacccatt
cctctctacaaaatgacatccccagtagctggtacagctcctccattagtatggtcacca
tctgagtcaatggaacagatagcatctcgagatgaaagaattgcagtgccagtcaaaaaa
acaggaatactgcaagatgccaagaagcgaagcactgcaaaacccatgtttacttttaaa
gaatctcccaaattaagtcccaatcctgccctgttatctcttgttcaaaatcaagaagga
aagaaaggtcctggagctggtaatgaatcagggcctgaagaagattacctcagcttgggt
gcggaggcttgcaattttatgcatatccaagcagccaaacagaagaccccaccgcctgta
gctccaaagcccgccgttaaagcctctcctactgctgtaactccagtttcacctgctgtg
gcttcaactcaacctccagtcttcccaaaccaaaacatatctgaagataatgctcctgta
ccagtgagctcagcacatcatattcatcattattaccagcccccaagcactcttaacttg
actggtccttttaaaggggctcaaacagtagcagcagcagcagcaaaccaaaggcacact
cccaaaacaccacctggaaatgggagaacagcctatgagatgccagctctgaaaggcaga
ggagcagagctgtttgccaagaggcaatctcgcatggaaaagtatgtagtagattcatca
actgtgcaagccaacaaggtccgttcctcttctcctactccatccttaccaccttcatgg
aagtattcttccaatgttagagcacctccaccagtggcatataatcccatccagtcccca
atgtatcctctggcagcttccaaatctcagcccaagtcaatggcagctaaaaagtcaacc
aagaagaaacctacaaaaactctggatgctttagatgtcatgaaacatcaaccatatcaa
ctcaatgcatctctatttagtttccagcctccttcagaagccaaggaagatgtgattcca
cagcattctcctaaagttgatggcccagcttccttaaagcgggcacagccctccaagcca
attagtgatggctctcatactaacttcagggcatcatcagtgtattctgtgccagcctac
agctcacagccatccttcctgtctaccccagcaaatgaatcctatgagtctgtggaatat
ccagtggtttccaagcaagagcccatggcatcatctatgattcctcctccaaggccaaag
ttttccgccaagaaagttggtgtcacagcccaggatatggatggtcgtcgatcagcaccg
ggcttcctacaacgcacaatgtctgtgacctcacctgctcaattccatcctgctcccgga
tactctgcccaaatttctgatcctcttggccggaggctgtctccgtgggaagcagcagca
aagtctcctctcggtcttgtggatgatgcatttgctcccagaaacattcaggaatctatt
gcagccaatgtggtatctgcagcacggcgcaaaactctgcctgaacctccagaagcctgg
aagcagcgagtctcctatgcagcccctagcacattctccagtgtgggcctgggtgtaaga
aggcagccaggggtagtgtcacctccaagaagtagtgtgtcagccccaagtgcatcactt
cagtggaggcatccataccgtggccagcattctctcacctatcctggtatggctcgcatg
gagaccaggcctgagaatttcctgtccttcctgcctgattcaaactacaacccctatccc
agggcatggaggcactga
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integrated database retrieval system
