Geotrypetes seraphini (Gaboon caecilian): 117360917
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Entry
117360917 CDS
T09159
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03013
Nucleocytoplasmic transport
gsh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117360917 (UPF3B)
03015 mRNA surveillance pathway
117360917 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117360917 (UPF3B)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117360917 (UPF3B)
mRNA cycle factors
P-body specific factors
117360917 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Fer4_11
Motif
Other DBs
NCBI-GeneID:
117360917
NCBI-ProteinID:
XP_033801426
UniProt:
A0A6P8RH30
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All DBs
Position
5:28161457..28207822
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AA seq
459 aa
AA seq
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MKEDKENAKPKERRAEVRVEDLEKPERVKEKKETLSKVVIRRLPPSLTREQLEEHLQPLP
EHDYFEFFSNDSSLFPHMFSRAYINFKNQDDIVLFRDRFDGYVFIDQKGQEYAAIVEFAP
FQKVAKKKSKKKDAKCGTIEEDPEYRKFLENYSADDEKLACTPETLLEEIEARNKELIAK
KTTPLLNFLKNRQRIREEKREERRRRELERKRQREEERRKWKDEERRKRKEAEKLKKVEK
GLAETEREKSKDEPKIKLLKKPEKDDERDLEKKNKSRKSEKENLKEEKITTGQSTTLKRS
DGEMKEEKIKKTEEDYGRDYREKDYERERRVREKEKLRRLEEDRHKQRERYERDKTFRRR
EEEFRKERDFYKERPKKEEFADFTINSDKTERTTKDDRKEETIKRDRIRNKDRPAMQLYQ
PGVRSRGRIAHCEENAPKLAEQGADKKQECETHEIKEEE
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaggagaacgcgaaacccaaagagaggagagcggaggtgcgggtcgag
gacctagagaagccggagagggtgaaggagaagaaggaaactctgagtaaggtggtgatt
cggcgcttgccccccagcctgaccagggaacaacttgaagagcacctccagcctttacct
gagcatgactactttgaatttttttctaatgactcaagcttgtttcctcacatgttttcc
agagcatatatcaactttaagaatcaagatgacattgttttgttcagggatcgctttgat
ggatatgtttttattgatcagaaaggtcaggagtacgccgccatagtagaatttgcacca
ttccagaaagttgccaaaaagaagagtaagaaaaaggatgccaaatgtggaaccatcgaa
gaagatcccgaatacagaaaatttttggagaactacagtgcagatgatgagaagttggcc
tgcacccctgaaactctgctggaagaaatagaggcacgaaacaaagaactaatagctaaa
aagacaacaccacttttgaacttcttgaagaacagacagagaataagagaagaaaaaaga
gaagagaggaggaggagggaactggaaagaaaacgacagcgggaagaagagaggaggaaa
tggaaagatgaagaaagaaggaaaaggaaagaagcagagaagctgaagaaagtagagaaa
ggcctggcggagacagaaagagagaaatcaaaggatgaacccaagattaagctgctgaag
aagccagaaaaagatgatgaaagggatttggaaaaaaaaaataaatcaagaaagtctgaa
aaggagaatctgaaagaggaaaagattacaactggacaaagtacaactctgaagcgatca
gatggagaaatgaaagaagaaaagataaagaaaactgaagaggactatggaagagattat
cgggagaaagactatgagcgggaaagacgcgtaagagagaaagagaaactgagacgccta
gaggaagatcgtcacaagcagagggagcgatatgagcgagacaagacgttccgaagaaga
gaggaggaatttagaaaggaaagggacttctacaaggaaaggccaaagaaagaggagttt
gcagactttacaataaacagcgataaaactgaaagaaccaccaaagacgacagaaaagaa
gaaacaattaaaagggatcgaataagaaacaaggatcgtcctgcgatgcagctttaccag
cctggggtccggagtcggggtaggatagcacactgtgaagagaatgcccctaagttggca
gagcaaggtgcagacaaaaagcaagaatgtgagacacatgagataaaagaagaagagtga
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