Geotrypetes seraphini (Gaboon caecilian): 117362271
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Entry
117362271 CDS
T09159
Symbol
LIG4
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117362271 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117362271 (LIG4)
Enzymes [BR:
gsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117362271 (LIG4)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117362271 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
BRCT_2
DNA_ligase_IV
RNA_ligase
RTT107_BRCT_5
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
117362271
NCBI-ProteinID:
XP_033804311
UniProt:
A0A6P8RJX8
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All DBs
Position
6:complement(118539324..118553968)
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AA seq
906 aa
AA seq
DB search
MSTSAQESVMKTVASQVPFADLCRTLEKIQRSKSRQDKTKYFKDFLDAWRKYHDALHKEN
TVDSFYPAMRLILPHLERERLAYGIKETMLAKLYIEVLGLPKDGKDALKLLNYRAPTGLH
GGVGDFAMIAYFVLKQRFPKEGTLTIEQVNTILDSVANNNALRKRDIVKKNILKLIVQST
ALEQKWLIRMIIKDMKLGISQQAIFSIFHPDAIELHGVTTDLEKVCRQLHDLSVSLSDIS
IMLFSVFKPMLASVVNIQHIEKQMQNRSFYIETKLDGERMQMHKDGDVYKYFSRNGHDYT
QQFGASPLEGSLTPFIHNVFNTDVQNCILDGEMMAYSPNAQSFMQKGSKFDIKRIMDDSD
LQTCYCVFDVLMLNDDKLARETLKKRYEVLQNLFSPVIGRIHVVHKKEANTKKNVVDALN
EAIDNREEGIIVKDPMSSYKPDKRGEGWVKIKPEYVDGLIDEVDILIVGGYWGKGSRGGM
MSHFLCAVAETPPSSEKPSTFVSFCRVGSGYTMKELYDLGLKLAPHWKPYHKQNPPRNVL
CGPEKPEVFIDPFNSVVIQIKAAEIVPSNMYKTSCTLRFPRIEKIREDKEWHQCMTMKDL
NELRERASGKLASKHLNIDDEPYEKKRKIMPKISKAIGVIEHLKAPDLSTVNKVSNMFED
IEFCVMSGTDDYSKYELENKITEYGGIVVQNPGQDTYCVIAGTENVRVKNIISSNKNDVV
TAKWLLRCLETNRIVALQPCHMIHMCPFTKQHLALKYDCYGDSYFTDSDLVQLRDVFHRM
HNNKKIPLDIIADLEQHYSYDNFSFNMFRHCIVFLDIFAIXNDPTTKIHASILDIKAFEL
RLYGATIVKCLEEGVTHVVTGDDHSRVRKIKTLRRTFGKKFRIVSEHWITHSLKAGKQQD
ENKYLI
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatctgctcaagaatcagtaatgaaaactgtagcatcacaagtgccatttgca
gatctctgtagaacccttgagaaaattcaaagaagcaagtcccgacaagataaaactaag
tattttaaagactttctggatgcatggagaaaatatcatgatgcccttcataaagagaac
actgtggactcattttatcctgcgatgcgacttattcttccacatttggaaagagaaaga
ttagcttatggaattaaggaaaccatgcttgctaaactttatattgaagtacttggttta
ccaaaagatggcaaagatgctttaaagcttttaaattatagagctcctacaggcttgcat
ggtggtgttggggactttgcaatgattgcttattttgtactgaagcagcgatttccaaaa
gaaggcactttgactatcgagcaagtgaatactattttagattcagttgctaacaacaat
gctctgagaaaaagagacattgtgaagaaaaatatccttaaattaatagttcagagcaca
gcccttgaacagaagtggttgatccgaatgattataaaagacatgaaacttggaattagt
caacaagctatattttccatttttcacccagatgcaattgagttacatggtgttacaacg
gacctggaaaaagtttgtaggcaattgcatgacctttcagtgtcccttagtgatatatcc
attatgttgttttctgtttttaaaccaatgcttgcttctgttgtcaatattcaacacatt
gagaaacaaatgcagaatcgaagtttttacatagaaaccaaacttgatggtgaacgtatg
cagatgcataaagatggagatgtatacaagtatttttctcgaaatggccatgactatacg
cagcaatttggtgcatctccccttgagggatccttaactccatttattcataatgttttc
aacaccgatgtgcaaaattgcattcttgatggtgaaatgatggcttacagtcccaatgca
caatcatttatgcagaaaggaagcaagtttgatatcaaaaggataatggatgattcggat
ctacaaacatgctattgcgtgtttgatgttttaatgcttaatgatgataagttagctcgt
gagacactgaagaaaaggtatgaggtactccaaaatctattttcaccagtaattggtaga
attcatgttgtgcataagaaagaggccaatacaaagaaaaatgtagtggatgctctaaat
gaagcaatagataatagagaggaaggaatcatagttaaagatcccatgtcttcttacaag
cctgacaaacgtggagaaggctgggtaaaaattaagccagagtatgtggatggtttgata
gatgaagttgatattttaattgttggagggtactggggtaaaggatcacggggtggtatg
atgtctcattttttgtgtgctgttgctgagactcctccttctagtgaaaaaccatcaaca
tttgtttctttttgccgtgttggctctggctatacaatgaaggaactatatgaccttggt
ttgaaactggccccacactggaaaccttaccataaacaaaatccacctagaaatgtttta
tgtgggcctgagaagcctgaagtatttattgatccttttaattcagtggttattcagatt
aaagcagctgaaattgtgcctagtaatatgtataaaacaagctgtactttacgtttccct
cgtattgaaaaaataagagaagacaaagagtggcatcagtgcatgactatgaaagatttg
aatgaactcagagagagagcttcaggaaagctagcttccaaacaccttaatattgatgat
gaaccatatgaaaagaaacgtaaaatcatgccaaagattagtaaagcaattggtgttatt
gaacatcttaaagcccctgatctttctactgtaaataaagtgtctaatatgtttgaagat
atagagttttgtgtaatgagtggaactgatgactattcaaaatatgagctggagaacaag
attactgagtatggaggcatagtagtacaaaatcctggacaagatacttattgtgttatt
gcagggactgagaatgtaagagtaaaaaacataatttcttcaaacaaaaatgatgttgtg
acagctaagtggctcctgcggtgtttagagaccaatcgtattgtggcattgcagccctgt
catatgattcacatgtgtccatttactaagcaacatttggccttaaaatatgactgctat
ggagacagttactttacagattctgatctggttcagctaagggatgtattccacagaatg
cataacaataaaaagattcctctggatataatcgctgacttggagcaacactactcttat
gacaatttttcattcaatatgtttcgacactgcattgtttttttggatatctttgcaatt
nataatgatcccactaccaaaattcatgcatcaatattagatattaaagcctttgagcta
cgtttatatggggctaccatagtaaagtgtttagaagagggagtaactcatgtagttact
ggagatgatcactctcgtgtgagaaaaataaaaactctccggagaacatttggaaagaaa
ttcagaattgtgtctgaacactggataacccactcactgaaagcaggcaaacagcaagat
gaaaacaaatatttaatttag
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