Geotrypetes seraphini (Gaboon caecilian): 117363022
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Entry
117363022 CDS
T09159
Symbol
LMO7
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
117363022 (LMO7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsh04121
]
117363022 (LMO7)
Ubiquitin system [BR:
gsh04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
117363022 (LMO7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
PDZ
PDZ_2
PDZ_6
DUF6288
DUF3775
Motif
Other DBs
NCBI-GeneID:
117363022
NCBI-ProteinID:
XP_033806068
UniProt:
A0A6P8RL37
LinkDB
All DBs
Position
6:complement(88884963..89329829)
Genome browser
AA seq
1743 aa
AA seq
DB search
MAVMDRRENVDPDCDSAFAEAQRWVEEVTGKSFENKDFRSALENGVLLSDLINKIKPGII
KKINRLSTPIAGLDNINVFLKACGKLGLKEAQLFHPGDLQDLSSRVTVKREESIRRLKNV
LITLYWLGRKAESNPYYNGPYLNLKAFEGLLGQTLTKALEESSSLKRSGRDSGCGDIWYT
DRESLSSLSAAHRRDDSFDSLDSFGSRSLTSLSDTTLKGSSEGCESDTDSEFFLKMQDVK
KNDMSYRRVVTMEPKPVGTYNQFLPSKNQQAVYLPAPLRKKRADKHEDNRRSWASPVYTE
SDGTFTSLQRQILGAKVCIDSALKNTWNPITHNVYKEEHASIPDLGKNNLRAQRLNLPAP
SSKVWLGVFLPKYWTPEEELCWGKIKSGSRTRPWYKEFQGFRKSESEDDDLACEISQVVS
GGQRVGHGLSMDFRRDLGHPSSNMAQAAGGRDADASDQPSQFKILQALQKFTADYLSSET
KPKTDPSAGPRVVTYTKKVFTPRCNKDDNVNGYSSPDLENDDLFARKIRAFHINQVMEVG
IRRTPVEECPLEKDIVLQTKDSEIPDLEKDDMITRRGERQKMEVPLSGAPDKYHAIPFPE
PWTLPEEIQMKFLCPIKRATESGEKRHQGRIIVPSEQRKKDDMLSRKIGSWHVAGAVQQS
SFIPGPCSEEDLKRWESIREASRMRHKKRQLVERLFQKLSFDDGSKSAEDVNSEDLQAMR
KIRFDELQKIKSQLQEQDHQWQDDLAKWKNRRKSFTSDLQKKKEEREEMEKNASESSERH
TKTFREMQQDRESREQDYHNGSLLKGGYRRPYSLSDDVFAEEMEPSFSRAGKDYPVKVNA
PGDESIKRLSKKAYTTEVGTQQVEKFKQPIQKSYTVEVDAPYSITRNETTYSTYNSQKTT
TIEEPKIPSEDQKPASLSTHQTLTAQTRLPGVSASLPRSYQRTDTSRITSVVTPRPFGVQ
SKGISSLPRSITLDDSRKYNGDLYGEKQALNNFATNSLPKRDNYQHHTSSTEKSDETDEE
EKQEETQATPSTESLLPLSQNQDIDYSRLKSSHYTTSEAVTISSSAKTKSLPLSEAPSTG
PQERYSDMRVSINQRPGSSHGFGFKTTWNSNGVFVTSVEEGSPADFSQLRVNDEILAIGS
TELSHMDYSQWKEALDSALETGNLVMDVRRYGKNDWGRDPPSLPFKSHKTLNLTSMDTKL
VGSPENKWIDASSGVYGSTKSSNTSKSDLPVSLKNQTEMESINGTEGNSDSKPKESEPIS
LKNYKRRSQFFEQGGSEPAMPDLPVPSISVSNRWSWDPEEERRRQEKWQKEQERMLQEKY
RREQEKLQEEWQRAQEEAKKESSQNADQEYMLQKPSAMTASVPVFSSWRTSRDEIPPKPI
STRREEEEKGAQQQKNEWHREEEAFQLEQQRKRQEELQHEKERKEREESRRRYEEEQQRY
REEEEQRKWQHQVETERDQPRRIQMYQFQRPSNSRDLDEMDSYASDRTKLRSGSDLNDGH
AKTVGSSRYSDHTWNLGDSQRGSQKDQKSAESDRQRIILEMRKTTSLHNDNSWIRQRSSS
VNKDARSLPDTMRRGESLDSLDSSFRTNSWRQSPSINRLSASQDLSQPSQVGSTSSRSYM
QNPSSSLPSTGSTRTSLSHTTSTTSNSLRAQSPTCASQSSPPQRNWSVSGKKLCSYCNNS
LGKGAAMIIESLDLCFHLHCFKCIACDSDLGGSQSGAEVRIRNNELYCNKCYIKFKAQQP
TSM
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcatggatcggcgggagaacgtggatcccgactgcgactcggcgtttgctgag
gctcagagatgggtggaggaagttactgggaaaagctttgaaaacaaggattttcgatca
gctctagaaaatggagttctgttgagtgacttgatcaataagataaaaccaggcattatt
aagaagatcaatcgtctatctacaccaatagctggcttggataatataaacgtttttctg
aaagcttgtggaaaacttggattgaaggaagctcagctttttcatcccggggaccttcag
gacttgtcaagtcgagttactgtcaagcgtgaagaaagtatcaggagactgaaaaatgtt
ttgatcacgttgtactggctgggtagaaaagcagagagcaacccatattataatggtcct
tacctgaacctgaaagcttttgagggactgttaggacaaacactaaccaaggcactggaa
gagtccagcagcctgaaaagaagtggccgggacagcggatgtggtgacatttggtacact
gacagagaaagcttgtcgtcgctttcagctgctcacagaagggacgactcgtttgatagt
ctagattcctttgggtcgagatctctcaccagcttatcagacactaccctaaagggtagc
agtgaaggttgtgaaagtgacacggactctgagttttttctcaaaatgcaggatgtaaag
aaaaatgacatgtcttatcgtagagttgtaacaatggagcctaaaccagttggtacatac
aatcagtttctaccatctaaaaaccaacaggcagtatacttaccagcacccctacgaaag
aagagagcagacaaacatgaggataaccggagaagctgggcaagcccagtatatacagag
tctgatggaacatttacaagcctccagaggcagattttgggtgctaaagtctgcattgat
tcagcactgaaaaatacttggaatcccattacccataatgtgtataaggaagagcacgca
agtatcccagaccttggaaaaaataacctccgtgcccaaagactaaacctaccagcacct
agctcgaaagtttggcttggtgtgtttctgcccaaatattggaccccagaagaggaatta
tgctggggaaaaatcaaaagtggatcgcgtaccagaccctggtacaaggagtttcaagga
ttcaggaagtctgagtctgaagatgatgacttggcatgtgaaataagccaagtcgtcagc
ggtggccagagagtgggtcatggtctaagcatggatttcagaagagatttgggccacccc
agtagtaacatggcacaagctgctggagggagagatgctgatgcttctgatcagcccagt
cagtttaaaatactgcaggccttgcaaaaattcactgctgattacctctcatctgaaacg
aaacccaaaactgatcccagtgctggccccagggttgtaacgtatacgaagaaagttttt
actccaagatgcaataaagacgacaatgtgaatgggtactcaagcccagacttggagaat
gatgatctctttgcacgtaaaattagagctttccacatcaatcaagtcatggaagtgggt
attcgaagaactcctgttgaagaatgtcctctagagaaagacatagtactacaaacaaag
gatagtgagattccagacttggagaaggatgacatgattactcgcagaggtgaaagacag
aaaatggaagtgcctttatcaggtgcaccagacaaataccatgctataccttttccagag
ccatggacacttccagaagaaatacaaatgaaatttctttgcccgattaagagagccact
gaatcaggggagaaacgtcatcaaggcaggattatagtaccttcagaacagcgaaagaaa
gatgatatgctgtctagaaagattggctcttggcatgttgcaggtgctgtacaacaaagc
agtttcattcctggtccttgtagtgaggaggacttgaaaagatgggagtctatccgggag
gccagcagaatgaggcacaagaaacggcagctggttgagagactgttccaaaaactttcc
tttgatgatgggagcaaatctgcggaggatgttaactcagaggacctgcaggctatgcgt
aaaattcgctttgatgagctgcagaaaataaaatcccaattacaagaacaggatcatcaa
tggcaagatgatttagcaaaatggaaaaatcgccgaaagagctttacttcggatttacaa
aagaagaaggaagaacgggaagaaatggagaaaaatgcctctgagagttcagagcgacac
accaagacgttccgtgaaatgcagcaagacagggagagcagggagcaagattaccacaat
ggcagcctgctgaaaggagggtacaggagaccctattcattgagtgatgatgtgtttgct
gaagaaatggagccttccttttcacgagctgggaaggattaccccgtgaaagtcaatgct
cctggagatgaatctatcaaacgactaagtaaaaaggcttatactacagaagtcggtaca
caacaggtggaaaagttcaaacaaccaatacagaagagttacactgtggaagtcgatgca
ccctacagcataacaaggaatgaaacaacttacagcacatacaattctcaaaagaccacc
acaatagaagaacctaaaatcccttcagaagatcagaaacctgccagtttatccacacac
caaactctgactgctcaaactaggctgcctggagtctcggcctctctccccagaagctac
cagagaacagatacctcaaggataacatctgtggttaccccaagaccctttggtgtccag
tcaaaaggaatatcatcacttcctcggtcaatcacgctggatgattcacgaaaatataat
ggcgatctatatggagaaaaacaagctctgaataactttgcaaccaattcactgcctaag
cgagataattatcagcatcatactagcagcacagagaaaagtgatgagacagatgaggag
gaaaaacaggaagaaacacaagcaacaccatcaactgaatcactacttcctttatcccaa
aaccaggatatagattactccaggttgaaatcatcacattacaccacttctgaagccgtt
acaatctcgtcttctgccaaaacgaagagcctgccattatctgaggccccaagtacaggg
ccacaggaacggtacagtgatatgagagtcagcatcaaccagagaccagggagcagccat
ggctttgggtttaaaaccacctggaatagtaatggagtttttgtgacctcggttgaagaa
gggagcccggcagatttttcccagttgcgtgtgaatgatgagatccttgctattggcagc
accgagctttctcatatggactacagtcagtggaaggaagcgctggacagtgcactggaa
accggaaacctggtaatggatgtcagacgatatggaaagaatgactggggcagagaccca
ccttccctgccatttaaaagccataaaaccctaaatcttaccagtatggataccaaactt
gtaggttctcctgaaaataaatggattgatgcaagctcaggagtgtacggttccacaaaa
tcttccaacacatcaaagagtgatttgcctgtcagtcttaaaaatcagactgaaatggaa
agcatcaacgggacagaaggcaactcagattctaaaccaaaagaatctgagcctatttct
ttgaaaaactataaaagacgatcacaattttttgagcaaggaggctcagaacctgcaatg
cctgatcttccggttccatctattagtgtgtcaaaccgctggtcttgggatccagaagaa
gagaggaggcggcaagaaaaatggcagaaagaacaagaacgtatgctgcaggaaaagtac
agacgtgaacaagaaaaactgcaagaagagtggcagcgagctcaagaagaagccaaaaaa
gagagttcccagaatgcggatcaggaatatatgctacagaaaccgagtgccatgacagca
tctgtgccggtattttccagctggaggacaagcagggatgaaatcccccccaaaccaatc
agcaccaggagggaggaagaggagaaaggggcacagcaacagaaaaatgagtggcacaga
gaggaagaggcttttcaactggagcaacagagaaaaaggcaggaagagctccagcatgag
aaagaaaggaaggagagagaggaaagcaggcgacggtacgaggaagagcagcagaggtat
cgggaggaagaggagcaaaggaaatggcagcaccaggtggagacagagagggatcagcca
aggcgtatacagatgtatcaattccagaggcctagtaactccagagatcttgatgagatg
gacagctatgcttcagataggactaaattaagatctggatcagacttgaatgatggtcat
gctaaaactgtaggaagcagcaggtattccgatcatacttggaatctaggtgattcgcag
aggggttcccagaaagaccagaagtcggcagagtcagacagacaacggattattctggaa
atgaggaagaccacttcactgcacaatgacaacagctggatcaggcagcgtagttctagt
gttaataaggatgcacgcagcttgcccgacacaatgagaaggggagaatcattagacagc
cttgactcttctttcagaacaaattcatggcgacagtcacctagtataaatcggttgtca
gctagtcaagacttaagccagccttctcaagtaggatccacttctagccgttcctacatg
caaaatccatcctccagtttaccttcaactggctcaaccagaacatctctatcccacact
acttcaactacatcgaactcgctacgtgcccagtcacccacatgtgcctctcaatcaagc
cctccacagcgtaactggtcggtcagtgggaagaaattatgctcttactgtaataacagt
ctgggtaaaggagcagctatgatcatcgaatctctcgatctttgtttccatttgcattgt
tttaagtgcattgcatgcgactctgacctcggaggttcacagtctggagccgaagtccga
atccgaaataatgagctatactgcaacaagtgctacattaaatttaaagctcagcaacca
acttccatgtga
DBGET
integrated database retrieval system
