Geotrypetes seraphini (Gaboon caecilian): 117365494
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Entry
117365494 CDS
T09159
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03013
Nucleocytoplasmic transport
gsh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117365494 (UPF1)
03015 mRNA surveillance pathway
117365494 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117365494 (UPF1)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117365494 (UPF1)
5.6.2.5 RNA 5'-3' helicase
117365494 (UPF1)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117365494 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
117365494 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
117365494
NCBI-ProteinID:
XP_033811861
UniProt:
A0A6P8S4N9
LinkDB
All DBs
Position
8:103546435..103903839
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AA seq
1154 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQGQSQLDGQVNG
PEGVLQNGAVDDVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQNRTQMYYQAWVPVAVLLTSYVIVVIALEIEGDIKANGEGGKVECKFHPSAIQLMSS
VILPIVRTPRHIYYKEDYRAVCYFPVLDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPD
NYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRYQSALKTFAVDETSVSGYIYHKL
LGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI
VYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQI
RNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRL
AKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLF
ERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKP
MFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQ
YMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTR
ARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINP
GARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISSGPSHVTAMNIPIPF
NLVMPPMPPPGYFGQANGPAAGRGIPKGKTGRGVRQKNRGIGIQGIGPSNLPNSQASQDV
VSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGE
RAYQHGGVTGLSQY
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagaccctcaccttcctggatacggaagag
gccgagttgctgggcgctgacacccagggctccgagttcgagttcacggacttcacgctg
cccagccagacgcagacgcagggtcaggggcagagccagctggatggacaggttaacgga
ccagaaggtgtcctgcagaatggagcagtggatgatgtggccaaagctagccagttgctg
gcagagcttaactttgaagaagatgaagaagatacttactataccaaggaccttccttta
catgcttgcagttactgtggtatccatgatccagcctgtgtggtttactgcaacaccagc
aagaagtggttctgtaatggacgtggcaatacatctggaagccacattgtgaatcacctt
gtaagggcaaaatgtaaggaggtgacactccacaaggatggaccattgggtgagactgtt
ctggagtgctacaactgtggatgtcgaaatgtatttcttcttggcttcatccctgccaag
gctgactctgtggttgttttgctgtgcaggcagccatgtgccagtcaaagcagcttgaag
gacattaattgggacagctcccagtggcagccacttattcaggatcgttgctttctttct
tggctggtaaagattccctctgagcaggagcagctgagggcccgtcagattacagctcag
caaattaataaactggaggaactctggaaggaaaacccgtctgcaacactggaggatctg
gagaaacctggtgtggatgaggaacctcaacatgtcctactgagatatgaggatgcatat
caataccaaaacatttttggacctcttgtcaaacttgaagcagattatgataagaaactc
aaagagtcacagaacagaacacaaatgtattatcaagcatgggtccctgtagccgtcctt
ctaacttcttatgttatagtggtgattgctttggaaattgaaggggacattaaagccaat
ggtgaaggaggcaaagttgaatgtaaatttcatccttctgcaatacaactcatgagcagc
gtgatattacctatagtcaggactcctagacacatctactataaagaagattatcgagct
gtttgttattttcctgtcctagatatgcgtcttatgcaaggtgatgaaatctgtttgcgg
tacaaaggagacttggcacctctgtggaaaggaattggacacgttattaaagttcctgac
aattatggtgatgaaatagccattgagctgagaagcagtgttggagccccagtggaggtt
acacataacttccaagtggattttgtgtggaagtcaacttcatttgacagatatcagagt
gctttaaaaacatttgctgtggatgaaacctcagtatctggctatatttatcacaagctg
ttgggtcatgaagtggaggatgtgatcattaaatgccagctgcctaaacgttttacagca
caaggacttcctgatctcaaccactctcaggtgtatgctgtgaagactgtcttgcagcgt
cctctcagccttatccagggtccccctggtacaggaaaaactgtgacatcagctacaatt
gtataccacctggcaagacaaggcaatgggcctgttctggtctgtgccccaagtaacata
gctgtggatcagctgactgaaaagatccatcagacagggttgaaggtggttcgactatgt
gcaaagagccgggaggccattgattctcctgtatcattcttagcattgcacaaccaaata
cgaaatatggacagcatgcctgaactccagaaactgcaacagttaaaggatgaaactgga
gaattatcctctgctgatgagaaacgctatcgtgccttgaagcggacagcagaacgtgaa
ttgcttatgaatgcagatgttatttgctgcacttgtgtgggagcaggtgatccaaggctt
gctaagatgcagtttcgttcaattttgattgatgaaagtacccaggctacagaacctgaa
tgtatggtaccagtggtgcttggagctaaacagttgatcttggttggtgatcattgccag
ctgggcccagtggtgatgtgcaagaaagctgcaaaggcagggctctctcagtccctcttt
gaaaggcttgtggttcttgggatccgtccaattcgccttcaagttcagtaccgtatgcat
cctgctctcagtgctttcccctccaacatattctatgaaggatcacttcagaatggagtt
actgcagcggatcgtgtaaagaaggggtttgattttcagtggccgcagccagacaagcca
atgttcttctatgtgacacaggggcaagaagaaatagccagctctggcacatcctacctg
aacaggactgaagctgctaatgtggagaagattaccacaaagctactgaaggcaggtgct
aagccagaccagattggtatcattaccccatacgagggccagcgctcctacctggtgcag
tatatgcagttcagtggctctttacacacaaaactctaccaggaagtggaaattgcaagc
gttgatgcttttcagggacgagagaaggacttcattatcctttcatgtgtgagagcgaat
gaacaccaggggattggctttttaaatgaccccagacgtcttaatgtggctcttaccaga
gcaaggtatggagttattattgtgggaaatccaaaggctttgtcaaaacagccactctgg
aaccatctgttgaattactataaggagcagaaggtgctggtggaaggaccattgaataac
ctccgggagagcctaatgcaattcagcaagccccgtaaacttgtcaataccatcaaccca
ggtgcccgattcatgaccactgcaatgtatgatgctcgagaagccattattccaggatct
gtgtatgatcgcagcagccaaggacgaccttccaacatgtacttccaaactcatgatcag
attggcatgatcagttctggacccagccatgtcactgctatgaacattcctatccccttt
aaccttgtgatgccaccaatgccacctccagggtactttggacaggctaatggaccagct
gcaggacgtggtataccaaaaggcaagactggccgtggcgtgcgccagaaaaatcgtggc
attggaattcaaggcattggtccatctaatctgccaaatagtcaggctagtcaagatgtg
gtgtctcagccattttcccagggtccattgactcagggttatatctccatgagtcagcca
tctcaaatgagccagccaggcctctcccagccagagttatcacaggacagttaccttggt
gatgagtttaaatctcaaattgacgtggcgttgtcacaggactcaacttaccagggagaa
cgtgcatatcaacatggtggtgtgacgggactgtcacagtactag
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