Gordonia sihwensis: P5P27_18335
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Entry
P5P27_18335 CDS
T08972
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gsi
Gordonia sihwensis
Pathway
gsi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P5P27_18335 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsi03400
]
P5P27_18335 (ligD)
Enzymes [BR:
gsi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P5P27_18335 (ligD)
DNA repair and recombination proteins [BR:
gsi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P5P27_18335 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RimP_N
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WFN92687
LinkDB
All DBs
Position
3846658..3848622
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AA seq
654 aa
AA seq
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MTRSHLDVDGRRIVLTNLEKVLYPETGTRKFDVVDYYIRIADAMVPHMASRPVTRKRWPG
GVESAPFFEKTLPAGAPDWVARFTIEHSERRTVYPVVRSAADLVWLAQVAALELHVPQWR
IDLSDDEERRTDRIVLDLDPGPGVTLDDCAAVALDIRAMLTDAGLESFPVTSGSKGIHVY
GRLASPVRSESARTVARQIATVLAQAHPRTVTATMAKAERERRVFIDWSQNTAAKTTLAP
YSLRGRERPWVAAPRSWDELSESGLAHLLCTEVLDRYENDGDLLAGLSEASPPVQTTTVP
GDAVVDLGEYRKKRSSRSRRESVAPPPRESAPARDSEVDDPLPGLVGLRPMLATDDPIES
LTDDWAYEGKWDGFRALIRVVGGRVRLISRSGNDLTGDFPELSVFGDLLVSGGRPVDAVL
DGEIVAINDAGLTDFSLLASRRRRAEPHELRVHLFDVLYLDGVRVWEQPWEVRREILESL
DYFDGEPLIDVPPLLPGPADTAIRTARDRGWEGVIAKRRASSYASGRRSPDWRKQKNWND
IEVVIGGYRPGRGSESKIGSLLVGLPAERGLRYLGRVGTGFSDAELDALLEELRPLRISM
CPFIDDIDKPVAGSATWVLPKLVADVQFMDWTSTGHLRHPSWRGIRRDKLPGDL
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgatcgcatctcgacgtggacgggcgcaggattgtgctgaccaacctcgagaag
gtgttgtatccggagaccgggactcgcaagttcgacgtcgtcgactactacatccggatc
gctgacgcgatggtgccgcacatggcctcgcgcccggtgacccgcaaacgctggccgggc
ggagtcgagtcggcgccgttcttcgagaagaccctccccgcaggcgcacccgactgggtg
gcccgcttcacgatcgagcactccgagcgccggacggtgtacccggtggtccggtcggct
gccgatctggtgtggctggcccaggtggccgcgctggagctccacgtgccgcagtggcgc
atcgacctgtccgacgacgaggagcgccgcaccgaccgcatcgtgctcgacctcgatccc
gggcccggcgtgacactggacgactgcgccgccgtggccctcgacatccgcgccatgctg
accgacgccggtctcgagtcgttcccggtcaccagcggttccaaggggattcacgtctac
gggcgcctcgcatcgcccgtgcggtccgaatcggcgcgcaccgtggcccgccagatcgcg
accgtcctggcgcaggcgcacccccgcaccgtcaccgcgaccatggcgaaagccgagcgc
gagcgccgggtcttcatcgactggagccagaacaccgccgccaagacgacgctcgcgccg
tactcgctgcgtggacgcgagcggccgtgggtcgcggcgccgcggtcgtgggacgaactg
tccgagtccggactcgcccatctgctctgcaccgaggtcctcgaccgctacgagaacgac
ggcgatctgctcgccggactgtcggaggcgagcccgccggtccagacgaccaccgttccc
ggcgacgcggtcgtcgacctcggcgagtatcggaagaaacggtcctcacgctctcggagg
gagagcgtcgcgccgcctccgcgagagagtgcgcccgcccgcgacagcgaggtcgacgat
ccgctgcccggtctcgtcggactccgcccgatgctcgccaccgacgacccgatcgagtcc
ctgaccgacgactgggcgtacgagggcaagtgggacggtttccgggcactgatcagggtg
gtgggcggccgggtccggttgatctcgaggtcgggcaacgacctcaccggcgacttcccg
gaactgtccgtgttcggtgacctcctggtctccggcggccgaccggtcgacgccgtgctc
gacggtgagatcgtcgcgatcaacgacgccgggctcaccgacttctcgctgctcgcatcg
cggaggcgcagagccgagccacacgagctccgggtgcacctcttcgacgtcctgtacctg
gacggcgtccgagtgtgggagcagccgtgggaggtgcggcgcgagatcctggagtccctc
gactacttcgacggcgaaccgctgatcgatgtgccgccgctgcttcccgggccggcggac
accgcgatccgcaccgcacgggaccgggggtgggaaggggtcatcgcgaaacggcgggct
tcgtcctacgcgagcggacgccgcagccccgactggcgcaaacagaagaactggaacgac
atcgaagtggtgatcggcggctaccggcccggtcgcggctccgagtcgaagatcggatca
ctgctggtcggcctgcccgccgagcgcggcctgcgctacctcggccgggtgggcaccggt
ttcagcgacgccgaactcgacgcactgctcgaagaactccggcccttgcggatcagcatg
tgcccgttcatcgacgacatcgacaagcccgtcgcgggcagcgcgacatgggtgctgccg
aagctcgtggcggacgtgcagttcatggactggacgtcgacggggcacctgcgccatccg
agttggcgcggaatccgccgtgacaagctgccgggcgacctgtga
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