Glycine soja (wild soybean): 114369753
Help
Entry
114369753 CDS
T06057
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114369753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114369753
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114369753
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114369753
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114369753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
114369753
NCBI-ProteinID:
XP_028182805
LinkDB
All DBs
Position
10:49494960..49501613
Genome browser
AA seq
922 aa
AA seq
DB search
MFSQNMILPPENPRPAGFASKPMGNEIAKPPPSILVGRFKALLKQRDDELRATSVPVPPP
STDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPVDQKLPS
LYLLDSIVKNFGQEYIRYFSLRLPEVFCEAYRQVQPSLHSAMRHLFGTWSKVFPPSVLHK
IEAELQFSQAVNTQSSTPNPVRASESSRPSHGIHVNPKYLRQLERSTVDSASKTHQFLSS
SSRLGISSSSPLRIGVDRPLSASIDEYAVDNPGVDYGVAKALGRDVDLTEWQRKLYSGDG
RNRFPTSFTYSLSNGHQRQSSRALIDAYGSDKSQETSNSKSLLVERLDRNGIDKVLSTSW
QNTEEEEFDWENMSPTLIDHSRNNSLLPSTFGFSRERPGVAANATLSEQDTRKGWSSGSQ
LPPVDDSSAIAEDAFASSTFCRAPPGQVPGSQNQINHSLGSSQPHDAWKISHHPSNIFSN
RGRARNLMIPPIDNIRNTDNNPYWVRPAVSRMEAHPSVLPAPFEMRPSVNVNVTRPPIIN
PLQKHVRSQFDAMNTSNPIANHVVNKSSFMPEQSFDSVENKDASILKIHQLPNQLSGVIS
SNQQNHGQAQQLQFFPSQDPSTSQFSHGSSLQGHGVSISTAMSNPLPVLPFPLPFQSISN
NPLHLQGGAHPPLPPGRPPAPSQMIPHPNAGAFMPSQQPTVGYTNLISSLMSQGVISLAN
QLPAQDSVGTEFNPDILKIRHESAVNALYGDLPRQCTTCALRFKCQEEHSSHMDWHVTKN
RMSKSRKQKPSRKWFVSDRMWLSGAEALGTESAPGFLPTETIEEMKDHEELAVPAEEDQN
TCALCGEPFDEFYSDEMEEWMYRGAVYLNAPLGITAGMDRSQLGPIIHAKCRSESNMATS
EDLGLDEKGADEEGSQRKRMRS
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgttttcacaaaacatgattctccctcccgaaaaccctagacccgcggggttcgcttcc
aaacccatgggcaatgagatcgcgaagcctccgccgtcgattctcgttggccgcttcaag
gctctcctcaagcagcgcgacgatgaactccgagccacatccgtccccgtcccgccgccg
tccaccgacgaaatcgtccagatttacgaactcctgctgtcggaactcacgtgcaatttg
aaacccatcatcaccgatctcacaattatcgccgaacagcagagggagcacgccaaaggt
atcgctgacgcaatctgcgctcggattctcgaggttccagtagatcaaaagcttccttca
ctctatctgttggacagtattgtgaagaattttgggcaggaatacattagatacttctct
ttacgtcttcctgaagttttctgtgaggcatacaggcaggttcagcctagtttgcattct
gcaatgcgccatctttttggtacttggtcaaaagtctttccaccttcagtcctgcacaag
attgaagctgagttgcaattttctcaagcagttaatactcaatcatccaccccgaatcct
gtcagggcttctgaatcatctcgaccaagtcatggcatacatgttaatccaaaatacttg
cggcagttggagcgctctactgtggatagtgctagtaagacacatcaatttttatcaagc
agtagcaggcttggaatatcctcgtcgtcccctttaagaattggagttgataggcctttg
tctgcatctatagatgaatatgcagtggacaatcctggtgttgattatggagtagccaaa
gcattaggtagagatgtggatttgactgaatggcagcgaaagctgtattctggtgatggt
cgtaatcgatttccaacttcttttacgtacagccttagtaatggacatcagcgtcaaagt
tcaagagctttaattgatgcatatggcagtgacaaaagtcaagaaacttcaaacagtaag
tctttgttagttgaacgtctggatagaaatggtatagacaaagtgttatcaacatcatgg
cagaatactgaagaggaggagtttgactgggaaaatatgagtccgaccttaatagaccat
agtaggaataacagtttattgccttcaacttttggtttctctagggaaaggcctggcgtt
gcagctaatgcaactttgtcagagcaagatactaggaaggggtggtctagtggatctcag
cttcctccagtagatgattcttctgccatagcagaagatgcatttgcctcttcaactttt
tgtcgtgcacccccaggtcaggtacctggatcccaaaatcaaatcaatcatagcctgggc
tcctctcaacctcatgatgcttggaagatttctcatcatccgtctaacatttttagtaat
agggggcgggcaaggaatcttatgatccctccaattgacaacattcgcaatacagataat
aacccatattgggttcgacctgcagtgtcgaggatggaagctcacccatcagttttgcca
gcaccttttgaaatgaggccttctgtaaatgtgaatgtcactcggccacccatcataaat
ccgttgcaaaaacatgttaggagtcagtttgatgccatgaatactagtaatcctattgcg
aaccatgttgtaaataaatcttcatttatgccagaacagtcatttgacagtgttgagaac
aaggatgcaagtattttaaagatacatcagttgcctaatcagctttctggagtaatttcg
tccaaccagcaaaatcatgggcaggcacaacaactacagttttttccttctcaggatcca
tcaacctcacaatttagtcatgggagttcattgcagggacatggtgtttctataagtaca
gccatgtcaaatccattaccagttctaccattccctttaccatttcaaagtatttcaaat
aaccctttacatttacagggtggagcccatccacctttacctcctggtcgccctcctgct
ccatctcaaatgataccccatccaaatgctggtgcatttatgccaagccaacagccaact
gttggatatactaatttaattagttctctaatgtctcaaggcgtgatctcattggctaac
cagctgcctgcacaggattctgttggaactgagtttaatccagatattctgaagattcgt
catgagtctgcagtcaatgccttatatggtgatctccctagacaatgcacaacttgtgcg
ctccgattcaaatgccaagaggaacacagtagtcatatggattggcatgtgactaagaat
cggatgtctaaaagccgtaagcagaaaccctctcgtaagtggtttgttagtgaccggatg
tggctcagtggtgcagaggcattaggaacagaatcagctccaggttttttgcctaccgaa
accatagaagaaatgaaagatcatgaggagttggcagtgccggcagaagaagaccagaat
acatgtgcattatgcggagagccttttgatgagttttacagtgatgaaatggaggaatgg
atgtatagaggagctgtatacctcaatgcacctttaggaataacagcaggcatggatagg
tcacagttaggccccataattcatgctaaatgcagatcagaatctaatatggccacctct
gaagatcttgggctggatgaaaagggtgccgatgaagagggttcccaaaggaaacgaatg
cggagttga
DBGET
integrated database retrieval system
