Glycine soja (wild soybean): 114374356
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Entry
114374356 CDS
T06057
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114374356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114374356
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114374356
Spliceosome [BR:
gsj03041
]
Complex A
U2 snRNP components
U2 related factors
114374356
Complex B
114374356
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
114374356
NCBI-ProteinID:
XP_028187798
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All DBs
Position
11:complement(868208..873404)
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AA seq
1107 aa
AA seq
DB search
MDEGKHKSRKENHEVKDGDSKRSHRDRDRDRTGERGKDKNDGRHRDREKRDRESRRHERE
STDSEDRYDRDREKLKDKDKDVDRERGRDKKRERDRERERTDRVREKERERERKEDKERI
RERERERKDHEREKEKERERGRKARGREKRREVDSDCSDGESKERDRKRHRKEDGDYKRE
RERSVSKPSRKSEEHEGSPRKKSGGDDSDTKDEEKKPTREEEMEDEQKRLDEEMEKRRRR
VQEWQELRRKREEAEREKHGEASANEPESGKTWTLEGESDDEEGPGTGKQTGMDVDEDDK
PADKEPKDVMVVDTVNGTIASDLQDGPAGAPEEEEIDPLDAFMNSMVLPEVEKLNNAVTS
SLSGKAIDVKPKDKGNRQNRGAQSRKVSNKSIGRIIPGEESDSDYADDEVEKDPLDEDDD
EFMKRVKKTKAEKLSLVDHSKIVYEPFKKNFYIEVKEVSKMTPEESAVYRKQLELKIHGK
DVPKPIKSWHQTGLASKILETIKKMNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLA
FVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGV
AQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLHRVTYLVMDEADRMFDMGFEPQITR
IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNER
FLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDF
KSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISE
EEARYAPDLLKALELSEQTVPNDLKALAGSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDE
VRKAAKKAQAKEYGFEEEKSDSEDEDEGIRKAGGDISQHSAFAQIIAATKGNVPALPTPM
LLPSLPVLPGTGLPLPANEGAARAAAIAALNLQDKLDKIRSEALPEHYEAELEINDFPQN
ARWKVTHKETLGPISEWSGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEHSVKSAKAD
LKRVLEDITNQAMQLPGGTQPGKYSVV
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggatgagggaaagcataaatcgaggaaagaaaatcatgaggtgaaagatggggattct
aagaggagtcaccgcgaccgtgaccgtgatagaactggagaaaggggtaaggataaaaac
gatgggaggcacagggatagggagaagagggatcgtgagtcccgaagacatgagagagag
agtactgattctgaagacaggtatgatagagacagggagaagctcaaagataaagataag
gatgtggaccgagaaagaggtcgagacaagaaaagggaaagggacagggaaagggagagg
actgacagagtaagagagaaagaaagagagagggaaagaaaagaggataaggagaggatc
agagagagagaaagagaaaggaaggatcatgagagagagaaggaaaaggaaagagaaagg
gggaggaaagcacgagggagggagaagcgtagggaagttgatagtgattgcagtgatggt
gaatctaaggagcgggatagaaagcggcataggaaagaggatggtgattacaagagagag
agggaaaggagtgtcagcaagccaagcagaaaatctgaggaacatgaaggaagcccaaga
aaaaagagtggcggagatgattcagataccaaagatgaagagaaaaaacctacccgtgaa
gaggagatggaggatgaacaaaagaggttggatgaagaaatggaaaagcggaggaggaga
gttcaagagtggcaagagctaaggaggaagagggaagaagcagaaagagaaaaacacggt
gaagcaagtgctaatgaacctgagtctggaaagacctggacgcttgaaggggaatctgat
gatgaagaaggaccaggtactgggaagcagacaggtatggatgttgatgaagatgacaaa
cctgctgataaggagcctaaggatgtgatggtggtagatactgttaatgggacaattgca
tctgatttacaggatggacctgctggtgctcctgaagaggaggaaatagatccattggat
gctttcatgaattctatggttctacctgaagttgaaaagctaaacaatgctgtgacatcg
tcactttctggtaaagccatcgacgtaaaacccaaggataaagggaataggcaaaatcgt
ggtgcacagtcaaggaaagtttcaaataagtctattggcagaataattcctggtgaagag
tctgactcagattatgcagatgatgaagtggagaaggatccattggatgaagatgatgat
gagttcatgaaaagagtgaagaagacaaaagctgagaagctttctttggttgaccactca
aagatcgtctatgaaccattcaagaaaaacttttatattgaagtgaaggaggtctcgaag
atgactcctgaagaatctgcagtatacaggaagcagttggagttgaagatacatggaaag
gatgtgccaaagccaataaaatcatggcaccagactggacttgctagcaaaattttggag
acaataaagaagatgaactttgaaaagccaatgcctattcaagctcaggcgctccctgta
atcatgagcggtcgagattgcatagggattgctaaaactgggtcaggcaaaacacttgct
tttgttctgccaatgctgaggcatatcaaggatcagccacccgttgttgctggagatgga
cctattgggctcattatggcccctacaagggaactagttcaacagattcacagtgatata
aagaaatttgctaaggtactgggtctgaggtgtgtgcctgtgtatggaggatctggtgtt
gctcaacaaattagtgagttgaaacgtggtgctgagatagtggtttgtactccaggtagg
atgattgacatactatgtaccagtagtggaaaaataactaacttgcatagagtaacttat
ctggtaatggatgaggctgatcgaatgtttgacatgggttttgaacctcaaatcacacgt
attgttcagaatattcgtccagatcgtcaaacagttctgttttctgctactttcccccgt
caggttgaaattctggctcgtaaggtcttgaataaacctgttgaaatacaagttggtggg
aggagtgttgtgaacaaagacataacacagctagttgaggtgaggccagataatgaaagg
ttccttagactcttagaaatattgggggaatggtatgaaaaaggaaagattttgatattt
gttcactcacaggagaaatgtgatagtttgttcaaagatctgctcaggcatggttatccc
tgcctttctcttcatggggccaaggaccagacagaccgtgaatccacaatatctgatttt
aaaagcaatgtctgcaatttattggttgcaacaagtattgctgccaggggattagatgtt
aaggagcttgaattggtgatcaattttgatgttcctaaccactatgaagattatgtacat
cgtgttgggcgcactggacgagctggccggaagggttgtgccattacatttatttctgag
gaagaggcaagatatgcacctgatctgctgaaagccttggagctatctgagcagactgtt
ccaaatgatctgaaagctcttgctggtagctttatggcaaaagttaatcaaggactggag
caagctcatgggactggttatggaggcagtggctttaaatttaatgaagaggaagatgag
gtgcggaaagcagcaaagaaagcacaagccaaggaatatgggtttgaagaagagaagtca
gattctgaagatgaagatgaaggtattaggaaggctggcggtgatatctcacagcattct
gcttttgctcagattatcgctgccactaaaggtaatgttcctgcattgcctactccaatg
ctcctaccatccttgccagttttgcctgggacagggctacctcttcctgcaaacgagggg
gcggctcgagcagcagcaatagctgctctaaacttgcaggacaaattagataaaatacga
tcagaagcattaccagagcattacgaggctgagttggaaataaatgattttccccaaaat
gctcgctggaaagttacacacaaggaaactttaggccctatttctgaatggagtggagct
gcaattaccaccagggggcagtttttcccacctggcaaaatcccaggacccggggaacgc
aaactctacttgttcattgaaggtcctactgagcattctgttaagtcagctaaagcagac
ttgaagcgcgttttggaagacatcacaaatcaggctatgcaacttcctggtggaactcaa
ccaggcaaatactctgttgtgtaa
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