KEGG   Glycine soja (wild soybean): 114380093
Entry
114380093         CDS       T06057                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03030  DNA replication
gsj03410  Base excision repair
gsj03420  Nucleotide excision repair
gsj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    114380093
   03410 Base excision repair
    114380093
   03420 Nucleotide excision repair
    114380093
   03430 Mismatch repair
    114380093
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gsj03032]
    114380093
   03400 DNA repair and recombination proteins [BR:gsj03400]
    114380093
Enzymes [BR:gsj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     114380093
    6.5.1.6  DNA ligase (ATP or NAD+)
     114380093
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     114380093
DNA replication proteins [BR:gsj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    114380093
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     114380093
DNA repair and recombination proteins [BR:gsj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     114380093
   NER (nucleotide excision repair)
    Other NER factors
     114380093
   MMR (mismatch excision repair)
    Other MMR factors
     114380093
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 114380093
NCBI-ProteinID: XP_028194822
LinkDB
Position
12:complement(6407958..6415731)
AA seq 776 aa
MLALHFRPCFPLPFHRSLTVRVSSLLSFPLSLSSAVPLRAMSKPPSAFDALMSGARAAAA
AKKKSQSLSQSSPSSPKKRKTPPSSSSQNPSDLKPPSPPKTVTPQEGAVKPEPLKVRHVS
SSSFSQEKTAELKKQAPQLKKKPSDFDPASISAWEKGQPVPFLFLCLAFDMISQESGRIV
ITDIVCNLLRTVMYSTPEDLVKVVYLSANRIAPAHEGMELGIGDASIVKALAEAYGRTEV
WIKTQYQKKGDLGLVAKESRSSQPMMFKPEALTITKVFNTFRLIAKESGKESQEKKKNHI
KALLVAATDCEPQYLIRLLQTKLRIGYAEKTLLAALGQAAVYTEEHSKPPPDIQSPLEEA
SEIVKQVYSVLPDYDKIISALLTEGLWMLPKKCNFTPGVPIGPMLSKATKGVSEILNKFQ
DVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKPTVSSFILD
CEIVAYDRSTQKIRSFQMLSTRARKNVEIEDITVGVCIFAFDLLYLNGQALLQENLRVRR
EHLYASFEEEPGFLQFATTITSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPSKRS
LNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTG
FSEAVLEERSSSLRSKVIPKPKAYYRFGETINPDVWFEASEVWEVKAADLTISPVHRAAV
GIVDPNKGISLRFPRLLRVRPDKAPEQASSSEQVAEMYKAQKHNHTNNQNDDEDDD
NT seq 2331 nt   +upstreamnt  +downstreamnt
atgctcgcattgcattttcgcccttgctttcctcttcccttccatcgctccctaacagtt
agggtttcctctctcctctcttttcctctttctctctcctccgccgtccctctccgcgcc
atgtcgaagcccccctccgccttcgatgccctcatgtccggcgcacgcgccgccgccgcc
gccaagaaaaaatcccaatccctttcccaatcatcaccctcatcccccaagaaacgcaaa
accccaccctcctcttcctcacaaaaccctagcgacctcaaacctccttccccacccaaa
accgttacacctcaagaaggcgccgttaagcccgaaccgctgaaggtccgccacgtgtca
tcttcttctttttcgcaggagaagaccgcggagcttaagaagcaagctccgcagctgaag
aagaaaccctccgatttcgatcccgcttctataagtgcatgggagaagggccaacccgtg
ccgtttctatttctctgcttggccttcgacatgatttctcaagaatccggaagaattgtc
atcactgatattgtttgcaatcttctgaggactgtgatgtactccacgccggaggatctt
gttaaggtcgtttacctctccgcgaaccggattgcgcccgctcacgaagggatggaattg
ggtattggcgacgcttccatcgtcaaggcgcttgctgaggcgtacggaaggaccgaggtg
tggattaagactcagtatcagaaaaaaggggatttgggcttggttgctaaagagagccgt
tcctcgcagcctatgatgtttaagcccgaagcattgactattacgaaggttttcaacact
tttcgtcttattgctaaggaatctgggaaagaaagtcaagagaagaaaaagaatcatatc
aaggcacttcttgttgctgcaactgactgtgaacctcaatatctaatccgtttgctacag
acaaagttgcgaattggctatgctgagaaaactctcttagctgcattgggccaagctgca
gtatacactgaagaacactctaaaccgcctcctgatattcagtctcctttagaagaggct
tcagagattgttaaacaagtctattctgtacttcctgactatgacaaaataatatctgca
ctgcttacagagggtctatggatgcttccaaagaaatgtaattttactcctggtgttcca
attggacctatgctatcaaaggcaacaaagggtgtatctgaaattctaaataaattccag
gatgtggagtttacctgtgaatacaaatatgacggagagcgtgcccagatacattacctg
gagaatggatcagttgagatttacagtagaaatgcagaacggaatactgggaagtttcct
gatgttgttgccgctgtttcaaggttaaagaaaccaactgtatcatcatttattcttgat
tgtgaaattgttgcatatgatcgttcaacacagaagatccgttctttccagatgcttagt
actcgggctcgcaagaatgtagaaattgaagatataacggttggtgtttgcatatttgct
tttgatttgttgtatcttaatggccaagcacttcttcaggaaaacctgagagtccgtaga
gagcatctctatgcctcttttgaggaagaacccggatttcttcagtttgcaacaacaata
acatcaaatgatgttgaggaaatacagaattttcttgaccaagctgttggtgctagttgt
gagggattaattattaaaacattaaatgaggatgctacatatgaaccttccaagcgatca
ctcaactggctaaaactgaagaaagattatatggacagtataggggactcactagatttg
gtacctattgctgctttccacggtcgtgggaaacgtacaggagtttatggtgccttcctc
cttgcttgctatgacaatgataatgaagaatttcaaagtatttgcaagataggaacggga
ttctctgaagctgtgcttgaagaacgttcttctagtcttcgttctaaagtgattcccaaa
ccaaaggcatactatagatttggagaaacaataaatcctgatgtctggtttgaagccagt
gaggtgtgggaggtgaaagctgccgacctgaccattagccctgttcaccgtgctgcagtg
ggcatagtagatccgaacaagggcatatctctacgatttccacgactacttcgagtcagg
cctgacaaagctcctgaacaggcctcatcatctgagcaggttgctgaaatgtataaggct
caaaaacacaatcacacgaacaaccaaaatgacgatgaagatgatgattga

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