Glycine soja (wild soybean): 114380166
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Entry
114380166 CDS
T06057
Name
(RefSeq) uncharacterized protein LOC114380166 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114380166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsj03000
]
114380166
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114380166
04121 Ubiquitin system [BR:
gsj04121
]
114380166
Enzymes [BR:
gsj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114380166
Transcription factors [BR:
gsj03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
114380166
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114380166
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114380166
Ubiquitin system [BR:
gsj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114380166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Rtf2
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
114380166
NCBI-ProteinID:
XP_028194915
LinkDB
All DBs
Position
12:5445300..5453029
Genome browser
AA seq
1026 aa
AA seq
DB search
MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY
DKEKIVGTAANCERLVNGINMEKKMKTQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLN
LADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAVCCIQNVH
GFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRV
QQITGATNNMQRRSGNVLPPPLDDNMNSSSVKPIVKNSSCNFVNIVRGSPPNGIYGKNMA
LPASAAWGTQASNCQPPAGGLSYPNGPSKPKPDTGCSTLAFSAAVTGSIQASDVTKRPPS
SDGCHSMTPTVKSELLKPVKQYNNSVGSLVSAGEKTSASDVSPVLVNLNSQLSSLPLSRD
SDGNCTTANTIYSTNMTGQSCNSGPEEAMTATNEEIQNLSNELSSINIDRNAEHCGITKP
NSPPTDHALVKSPQIQGSKYNVDRFRDVITTNVTGKATLNNVACNSREQCDWKLDSQSLV
SDTAEIDDDVTSFDNQRLKDPEVVCRSYLPKSTSFLHASNHSSPCLLQHGELCTAINAGS
VSADDRVQNESMLHASNILCNGHPEKLVSSSSYGLLHDERNGHIIQRLVGDDVNFGHDVA
RDKGESSIISNILSMNFDTWDDSLTSPHNLAKLLGDNTDNRSGPLNKSSSWKGNGNNQSR
FSFARQEESKIQMFDAHASYGVSHQRPNHTVFQNFAERDLYMDKLGIANGFSTGNFEEAD
NLVSGHPIASSNKFSAISRAQVSAPPGFSIPSRLPPPGFSSHERVEQAFDSISVLLTGNS
LLDHSSLLRNSYQTPSAGNLGSAGDIEFMDPAILAVGKGRLQGALNSPALDIRSNFMPQL
NYFENDARLQLLMQRSLAPQQNLRFSEIGNTFSQLGDSYAVSSRLDQSQVSNLGPFQQLS
LQQSTNAVLSNGQWDGWNEVQSGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLY
NRTFGM
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgaaggagaaagaacttgtcctctctgtgctgaagagatggatttgacagat
cagcagttgaaaccttgcaaatgcggttatgagatctgtgtctggtgctggcaccacata
atggacatggctgagaaggatgacactgaggggcgatgccctgcatgtcgttctccttat
gataaggaaaagattgttgggacggctgcaaactgtgagagattggtgaatggaattaat
atggagaaaaagatgaagactcagaaagcgaagtctaaatcatctgatgggcgcaagcag
ctcagcagtgtgcgagtgattcagaggaaccttgtttacatagttgggttgcctctcaat
cttgcagatgaagatcttcttcagcggagagagtattttgctcagtatgggaaggtctta
aaagtgtcaatgtctcgaacagcagctggtgtaattcaacagtttccgaatgatacttgt
agtgtatatataacttattcaaaggaagaggaagcggtttgttgtattcaaaatgtacat
ggatttgttttggagggtagacctttaagggcttgttttggaaccacaaaatattgtcat
gcatggctccgaaatgtgccttgcagcaatccggattgtctatatttgcatgagattggc
tcccaagaagatagttttaccaaggatgaaataatttcagcatacactagaagtcgagtt
caacaaatcactggtgccacaaacaatatgcaacggcggtcagggaatgtattacctcct
ccactggatgataatatgaatagttcatctgtaaagcctattgttaaaaattcttcttgt
aactttgttaacattgtaagaggttcacctccaaatggaatatatgggaaaaatatggcc
cttcctgctagtgctgcatggggtactcaggcctcaaattgtcagccccctgctggaggt
ctatcatatccaaatgggccatccaagccgaaacctgatacaggctgcagcacactagca
ttttctgcagctgttacaggctcaattcaggcttctgatgttacaaagaggccaccatca
agtgatgggtgccatagtatgacacctacagtgaaaagtgaattgttgaaacctgttaaa
caatataacaatagcgtgggcagtctggttagtgcaggagaaaaaacttcagcttctgat
gtttctcctgtgctcgtgaatttgaacagccagttgtcttctctaccgttgtcccgagat
agtgatggcaattgtactacagcaaacacaatatattctactaacatgactggacagtct
tgtaactctggtcctgaggaagcaatgactgctaccaatgaagagattcagaatttgtcc
aatgagttgtcctcaattaacattgatagaaatgccgaacattgcggtataaccaaacct
aatagcccgcctactgatcatgcattggttaaatcccctcaaattcaaggatcaaaatat
aatgttgacagatttagagatgtgataactacaaatgtgactggtaaagctaccttgaat
aatgtggcctgtaattctagggaacagtgtgattggaaattggattctcaatctctagta
tcagatactgctgaaattgatgatgatgtgacatcttttgataatcaaagactcaaggat
ccagaagttgtttgccgttcttatttgccaaagtcaaccagtttccttcatgcatcaaac
cattctagcccttgtcttctgcagcatggggaactttgtactgccataaatgcaggttct
gtatctgctgatgatagagttcaaaatgaatctatgttacatgcatccaatatattatgt
aatggccacccggaaaaattggtcagcagcagctcctatggtctgcttcacgatgaaaga
aatgggcatatcattcaaagattagtcggtgatgatgttaattttgggcatgatgttgct
agggataagggtgaaagtagtataatttcaaatatattgtccatgaattttgatacctgg
gatgactcactaacatcacctcataatttagctaagttgttgggtgacaatactgataac
cggtctggtcctttaaacaaatctagttcttggaaaggtaatggtaacaatcaatcaagg
ttctcttttgcgaggcaagaggaatccaaaatccaaatgtttgatgcacatgcatcttat
ggtgtcagccatcaacggccaaaccatacagtcttccagaattttgcagaaagagacttg
tatatggataagttgggcattgcaaatggattttctaccggtaactttgaggaagctgat
aatttggtcagtggtcatcccattgcatcttctaataagttttctgccatttcaagagca
caagtttcagccccaccaggattttccattccaagcaggctgccaccacctgggttttct
tcccatgagagagtggagcaggcttttgactccatttctgtccttttgacagggaattct
ttgcttgaccattcttccctattgagaaattcatatcagacaccttcagctggaaacctt
ggtagtgcaggggacattgaatttatggaccctgctattttggcagttggcaaagggaga
cttcaaggtgcactgaacagcccggcactggacattcgatctaatttcatgccacaatta
aattacttcgaaaatgatgccagactacaattattgatgcaaagatctctcgcaccacag
caaaaccttagattttctgaaattgggaatactttttctcaacttggcgattcctatgct
gtttcttcaaggttagatcaatcccaagtcagtaatctaggcccattccaacagctatct
ctgcagcagtctacaaatgcagtcttgtcaaatgggcaatgggatgggtggaatgaggtg
cagagtggaaatggtttgggtgtggctgagcttttgagaaatgaaagacttggattcaat
aaattttattcaggatatgatgattcaaaatttcggatgccaaattctggggatctttac
aacagaacatttgggatgtga
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