Glycine soja (wild soybean): 114397525
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Entry
114397525 CDS
T06057
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114397525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114397525
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114397525
Spliceosome [BR:
gsj03041
]
Complex C
Other components
Step II factors
114397525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_19
AAA_22
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
HA2_N
ResIII
Helicase_RecD
ABC_tran
AAA_29
Arc_MA
Motif
Other DBs
NCBI-GeneID:
114397525
NCBI-ProteinID:
XP_028215398
LinkDB
All DBs
Position
18:complement(1071629..1078299)
Genome browser
AA seq
1729 aa
AA seq
DB search
MKKSSYPNPTPRRHDFHRPPPPTHGCGWAPRPAYHRPYHQWRPRFHPHAARIDRPPEPYF
RVELRLGSSPLHRDDVEALIDECHSRHDTFTFYPVDDVAAVLSYRSWEQARDAVVWFWEA
RLAEKHDFTPTLDSNVVVVKDDVDCRLRPVFARHVKGLTEGKEVKRWMEESERLSKEISR
LSSSLSKPLRLGVHNELVEKKKGLVDEKNLVERRLKEFESAMQCLLKYLEGGVDVEGVTV
FRFDGGFDWKRIHCLIKRECRRLEDGLPIYAYRSDILQEIHYQQIMVLIGETGSGKSTQL
VQFLADSGIGTDESIVCTQPRKIAAKSVAQRVQEESIGCYEGQSIKCCSTFSSSREFDSR
IAFMTDHCLLQHYMSDNNLSGVSCIIIDEAHERSLNTDLLLTLLKSLLCRRVEMRLIIMS
ATADAKQLSDYFFACGIFRVLGRSFPVDIKYVPSDYAGDSGSAVVASYVSDVVRMATEVH
KTEKEGTILAFLTSQIEVEWACEKFQAPSAVALPLHGKLSSDEQFRVFQNYTGKRKVIFS
TNLAETSLTIPGVRYVIDSGLVKDSRFDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGV
CYRLYTEADYQSMDLNQEPEIRRVHLGVAVLRILALGVKDVQGFDFVDAPSPSSIDMAIR
NLIQLGAIELNNDVHDLTSEGWCLVRMGIEPRLGKLILGCFKHGLGREGIILAAVMANAS
SIFCRVGNEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKS
MRRCQDTILELETCLEREHDVVTPSYWRWDPCMPSNHDKNLKRVILFSLAENVAMYSGCN
QLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSISNQYLVCVSAFDFQSLYDLCP
APLFDVSKMEERKLLMKTLSGLGCILLKRFCGKANCNLLALVSRIRKACMDERIFIEVNV
DNNEIHLYASSNDMDIALGLVNDVLEYERKWLRTECMDKFLYHGSGFSPPVALFGSGAEI
KHLELEKRSLSVDVCHPNINEIDDKELLMFFEKNTSGCICAVHKFTGNTRDEDRDKWGRI
TFMSPDIVRRAAELDGREFCGSSLKVVPSQLGGDKTFSFPAVKARISWPRRLSRGFAIVK
CDIKDVDYILRDFYNLAVGGRYVRCEVGKKSMDSVVINGLDKELSEAEISDVLRTATTRR
ILDFFLVRGEAVGNPPCSALEEALLKEIYPFLPKRNPHISPCRVQVFAPEPKDAFMRALI
TFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSLTFPTPVYRVIKEQLDEVLA
SFRNLKGLECNLDRTFNGSHRVKITANATRTVAEVRRPLEELLRGKTIEHDSLTPAVLQL
MLSRDGFSLKNSLQQETGTYILFDRHNLNLRVFGSPNMVALAQEKVIQSLLSLHEEKQLE
IHLRGRDLPPDLMKQMIKNFGPDLHGLKERVPGVDLTLNIRRHIIILHGSKELKPRVEEI
VFEIARSSHHLVERFGNGPSCPICLCEVEDGYRLEGCGHLFCRMCLVEQFESAIKNQGTF
PVCCTHRDCGDPILLTDLRSLLFGDKLEDLFRASLGAFVATSGGTYRFCPSPDCPSIYRV
ADPGSAGEPFVCRACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLIEWCRGKEQVKCC
SACGYVIEKVDGCNHVECKCGKHVCWVCLEFFSTSNDCYDHLRTIHLTI
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatcctcctaccctaatcccacccctcgccgccacgattttcaccgtccgcca
ccacccacccacggctgcggttgggctccccgccccgcctaccaccgcccctaccaccaa
tggaggccccgattccacccccacgccgcccgcatcgaccgccctccggagccctatttc
agggtggagctccgcctcggcagcagccccctccaccgcgacgacgtcgaggccctgatc
gacgaatgccactcccggcacgacaccttcactttctaccccgtcgacgacgtcgccgcc
gttctcagttaccggagctgggagcaggcgcgagacgccgtcgtttggttctgggaggcg
cggctcgcggagaagcacgatttcacgccgacgctggattccaacgtcgtcgtcgtcaag
gacgatgtggattgtcgccttcgaccggtgttcgcgaggcacgtgaaagggttgacggaa
gggaaggaggtgaagcggtggatggaggagagtgaacggttgtcgaaagaaatttctcgg
ctttcgagttcgctgagtaagcccttgcgacttggcgtgcacaacgagttggtggagaag
aagaaagggcttgttgatgagaagaatcttgttgaaaggaggttgaaggagtttgagtct
gcgatgcagtgtttattgaagtatttggagggtggtgttgacgtggagggtgtgactgtc
tttaggtttgatggaggttttgattggaagcggattcattgtctgatcaaaagggagtgt
cggaggcttgaggacgggttgcctatttatgcttaccggagtgatattcttcaggaaata
cattatcaacagataatggtattaatcggagagactggttctgggaagagtacgcagttg
gtacagtttcttgctgattcaggcattggtactgacgaatccattgtgtgcacccaacct
cgcaagattgctgccaaatcagtggctcaaagggtccaggaagaaagcattggatgttat
gaaggccaatcaatcaaatgctgttctacattttcatcctcacgtgagtttgattccagg
atagcattcatgacagatcattgtttattgcagcactacatgagtgataataatttatcc
ggggtctcgtgcatcataattgatgaggctcatgagaggagcttaaatacagatttactg
ttgactttgttaaagagtttactttgtaggagggttgaaatgagacttatcattatgtct
gctacagctgatgcaaagcagctgtctgattacttttttgcttgtggaatttttcgtgtg
cttgggagaagctttccagtggatatcaaatatgttccttctgactatgcaggagattct
ggttctgctgttgttgcctcatatgtttctgatgttgtcagaatggcaactgaggttcac
aaaactgagaaagagggaactattcttgcctttttgacctctcagatagaagtagaatgg
gcctgtgaaaagtttcaagctccctctgcagtagctttgcccttgcatggaaaactttct
tctgatgagcaattccgtgtttttcagaactacactggaaagagaaaagtgatattttca
acaaatcttgcagagacatcacttacgattcctggtgttaggtatgtgatagattctggg
ctggttaaagacagcagatttgatcctggtagtgggatgaatgtacttaaggtttgctgg
atcagccagagctctgctgatcaacgggctggtcgtgctgggaggactgagcctggtgtg
tgctatagactgtacacggaagctgattatcagtctatggacctaaatcaagagccggag
attcggagagttcatcttggtgtagcagttctgaggatccttgctttaggagtgaaggat
gtgcaaggttttgattttgtggatgctccaagtcctagctccatagatatggcaatcaga
aatctaattcaattaggagccattgaactgaacaatgatgttcatgatttaacttctgaa
ggttggtgcttggtaagaatgggaattgaacctaggctgggtaaacttattcttggttgt
ttcaaacatggtttgggtagggaaggtatcatccttgctgctgtgatggccaatgctagt
agcatcttttgcagagttggcaatgaatttgataaacaaagatctgattgtcttaaagtg
caattttgccattgtgatggtgacctctttactcttctctccgtgtacaaggaatgggaa
gctttgcctcgagaaaggaagaacaaatggtgttgggaaaacagtatcaatgccaaatcc
atgaggaggtgccaagacacaattttggagttagaaacttgccttgagcgtgaacatgac
gttgttactccgagttactggcgttgggatccttgtatgccctctaatcatgataagaat
ttgaaaagggtaatactgttctcacttgctgagaatgtagccatgtactccggctgcaat
caacttggttatgaagtggcacaaactgggcaacatgttcaactacatccatcttgttca
ttgcttgtatttgctcagaaaccaagttgggtagtttttggtgagcttctttccatttcc
aatcaatatttggtctgtgtgagtgcatttgattttcaatcattatacgacctttgccct
gctcccctgtttgatgtatccaaaatggaagagcggaagttgctaatgaagacactgtct
ggtcttggctgtattcttctcaagagattttgtggaaaagccaactgcaatttgcttgct
cttgtttcacgtataaggaaagcttgtatggatgaacgcatcttcatcgaagtgaatgtt
gacaataatgaaatccacttatatgcctcttcaaatgatatggatatagcccttgggttg
gttaacgatgttctagaatatgagagaaagtggttacgcactgaatgtatggataagttt
ttgtatcatggttctggtttctctccacctgtagctttgtttgggtctggtgctgagata
aaacatttggaacttgagaaacgttccttgagtgttgatgtgtgtcatccaaacataaat
gaaattgatgacaaggagctcttgatgttttttgagaagaatacctctggttgcatctgt
gctgtgcacaaattcacaggcaatacgagggatgaagatagggataagtggggcaggata
acatttatgtccccagatattgtcagaagagctgctgagctagatggacgggagttttgt
ggctcatccttaaaagttgttccttcacagttgggaggggataaaacattttcgttccct
gctgttaaagcaagaatttcttggcctcgtaggcttagcaggggatttgccatagttaaa
tgtgatataaaggacgttgattatatcttgagagatttctataaccttgcagtaggaggg
aggtatgttcgatgtgaagttggcaaaaagagtatggacagtgttgttataaatgggctt
gacaaagagctttcggaagctgaaatatcagatgtgctaagaactgctacaactagaagg
attttggattttttcttggtgagaggggaagcagttggaaatccaccatgcagtgctttg
gaagaggcactcctaaaagaaatttacccctttttgcccaaaaggaaccctcacattagt
ccttgccgagttcaggtgtttgcacctgagcccaaggatgctttcatgagagctttaatc
acttttgatggaagattacatttagaggcagcaaaagctttggagcaaattgaaggaaag
gtgttacctggatgtctttcatggcaaaagataaagtgccagcagttgtttcatagctcc
cttacatttcctactccagtgtatcgtgtgattaaggaacaactggatgaagtacttgca
agcttcaggaatttgaaaggtcttgaatgcaacctggacaggacatttaatggttctcac
cgagtgaagataacagcgaacgccacaaggacagtggcagaagttagaagacctctggaa
gaactattgagagggaaaaccattgagcatgacagcctcacccctgcagttctccaactc
atgttgtccagagatggctttagtcttaaaaactcattgcagcaagagactggaacttat
attctttttgacaggcacaacttgaatttacgggtgtttggttccccaaacatggttgct
ttggctcaggagaaggtgatacagtccctcctttctctccatgaagaaaagcagttagaa
attcatctgagagggagggatctacctcctgatttaatgaagcaaatgattaagaatttt
gggccagatctccatggattgaaagagagggtacctggggtagatcttacactgaacata
cgtcgccacataatcattcttcatggtagcaaggagttgaaaccgagagtagaggaaata
gtttttgagattgctcgttcaagccatcatttggttgagagatttggcaatggacccagt
tgcccaatttgcttgtgcgaggttgaggatggataccggcttgaaggctgtggccatttg
ttctgccggatgtgtttggttgagcaatttgaatctgctattaaaaaccaaggcactttc
ccggtatgttgtactcacagggactgtggagatcccatcctgcttacagatttgagatct
cttttatttggtgataagttggaggatcttttcagggcttctttgggagcttttgtggca
acaagtgggggaacttacaggttttgcccttctcctgactgcccctcaatttatcgagtt
gcagatcctgggtctgctggcgagccatttgtttgtagggcttgttattcagagacttgt
accaggtgccacttagagtatcatccttacctttcatgtgagagatacaaagaattcaag
gaagatccggattcatctctgatagaatggtgcagagggaaagaacaagttaagtgctgc
tcggcatgtggatatgtaattgagaaggtagatgggtgcaaccacgttgaatgcaagtgc
ggaaagcatgtctgctgggtttgtttagagttctttagtactagtaatgactgttatgac
catttaagaactatacacttaaccatataa
DBGET
integrated database retrieval system
