Galdieria sulphuraria: Gasu_38930
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Entry
Gasu_38930 CDS
T02926
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gsl
Galdieria sulphuraria
Pathway
gsl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Gasu_38930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsl03400
]
Gasu_38930
Enzymes [BR:
gsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Gasu_38930
DNA repair and recombination proteins [BR:
gsl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
Gasu_38930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
RNA_ligase
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
17087541
NCBI-ProteinID:
XP_005705205
UniProt:
M2WXC4
LinkDB
All DBs
Position
Unknown
AA seq
913 aa
AA seq
DB search
MENEAFSNFCSILEKVLKTKGTEEKLTLVESFWRRAMKAPSLIDIPARSVSPLDSFSILR
LLLPELDNDRRSFGMKERGLAELYISVFELDPSSFDAQRLRRWQDPTVQQQTGQIPAIPG
NFFSVLEAVLRHRCSDTSSLTISQVNELLNELNITLEKEKRKKIFHQIVTECTVTENIWI
SRIILKQMHLGLRFESILKWFHPSALEDYRLRHSLRRMCEDCFQPGFYIVSQDVILGQPA
SVSLAKRQENLQRIPYLMSDGFFLEPKFDGERLQLHKKGEDIQCFSRNALDTTHLYGPHL
KTAVLLCVDAQDCVLDGEVLLYNVDKQAFEHFDQIRHYISIAKDTKLDDNFLITYMIFDV
LYVDQNQNVPPSVVSFPLETRKEILKGIVRPFHSQIRLVPYKEGTTVEDIKQAMEDFIEQ
KYEGVVVKNKKKPYLLGKRDDEVMIKLKPDYFNDLVHDLDVLILGAFIGTGYSKTTRIGK
PSHFLIGILEKDIEEQDRNVEVSWIVIGKVGSGYSYEQLEQLQHKLAPFWKPYDKKAPPE
HLKHSLLRADGVPDFWIEPCHSIVLTIYAYEVRPSAIYSGYAVRFPRVANIRWDKRWFEC
STLDELTRPSEPPSASYSVDGLKTNKKRRAQPHLREKVDLISVPTRPEAFALKSSLCLDG
LVLCVVGASSNQEKQYYEKLVHQLGGKTVQSVTQDTRFVLAISPNHVAVTNMVRSFQNPL
QAVKSKLRSRGCLEPKSILKVNWLLECQVKDRMVEILPCHVVWATDSLRKEIETRCDCWG
DSWHKAVNEEELRELLSNMFIPESVPDDVKSVIASCPELKEIDYGGLFRSWHVIVEDFGH
FCETDAAAYLVSFFGCDLIVEKQEKMEAESWNDSSSYYYYYLVSNQDSQYKARGQVLTKA
MVWEMVERHILRE
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaagcttttagtaatttttgttccatccttgagaaggtattaaagacaaaa
ggcacggaggaaaagttgacgctagttgagagtttttggaggcgtgctatgaaagcgccc
tcgttgattgacattcctgccagaagcgtgtctcctcttgattcgttttccattttacgt
ttgctcctgcctgagctagataacgatagaagaagctttgggatgaaggaaaggggtctt
gcagaactttatattagtgtcttcgagttggacccttcttcgtttgacgcgcagagacta
cgtcgctggcaggatcctactgttcagcaacaaactggacaaataccggcaatacctgga
aattttttctcagttcttgaagcagtattacgacatcgttgttcagatacgagttctctg
acaatatctcaagttaatgaattattgaatgagttgaacattactttagagaaagaaaag
agaaagaaaatctttcaccaaatagtcacagagtgcacagtgactgaaaacatttggata
tctcgaattatcctaaagcaaatgcatttaggccttcgctttgagagtattttaaaatgg
ttccatccttcggctttagaagattatcgactaaggcattcattgcgtcgcatgtgtgag
gattgtttccagcctggtttctatattgtttctcaggatgtcattttgggtcaaccagct
tccgtatctttggctaaacggcaggaaaatttacaacgcattccttatttgatgtcagat
ggtttctttctggaacctaaatttgatggcgagaggctacagttgcataaaaaaggtgaa
gatatccaatgtttcagtcgaaatgctttggatacaactcatttgtatggacctcatttg
aagacagccgtattgttatgtgttgatgcgcaggactgcgttttagatggtgaagtgcta
ttatacaatgtggataagcaagcattcgaacattttgatcagataagacattatatttcc
atcgcgaaagataccaaactggatgacaattttcttatcacttatatgatatttgatgtt
ctctatgtcgatcagaatcaaaatgttcccccgagcgttgtatcttttcctctagaaacc
cgcaaagagatcttgaaaggaattgtacgtcctttccattcacaaattcgtctagttcca
tataaagagggtactacggtggaagacataaagcaagctatggaagattttattgaacag
aaatatgaaggagttgttgtgaagaataagaagaaaccttatttgttaggaaaacgagat
gatgaagtgatgatcaagctaaagcctgactatttcaatgatttggttcatgacttggat
gttctcattttaggtgcctttattggaacaggatattccaaaactacaagaataggcaaa
ccgagccactttttgattggtattttggagaaggatattgaggaacaagataggaatgtt
gaagtcagttggattgttattgggaaagtcggaagcggatattcttatgaacaattagaa
cagttgcaacacaagttggctccattttggaagccatatgacaaaaaggcacctcctgaa
catttaaagcacagtttgttaagagccgacggcgtgccggatttttggatcgaaccttgt
cattctattgtgcttactatttatgcttatgaagtaagaccaagtgctatttattcgggc
tatgcagtacgctttcctcgagtggcaaacattagatgggataaacgttggtttgaatgt
tcaacccttgacgagctgactcgaccatcagaaccaccatctgctagttatagtgtagat
ggcttgaaaacaaacaagaaacggagagctcaacctcatctccgagaaaaagttgacttg
atttctgtcccaactcgacctgaagcttttgcactaaagtcgagtctttgtctagatggt
ttagtattgtgtgtagttggtgcctcttcaaaccaggagaaacagtattatgaaaaactc
gtgcatcaattgggaggaaaaactgttcagagtgtgacacaagacactcgtttcgttttg
gctatttctccaaaccacgttgccgtcactaatatggttagatcttttcaaaatccattg
caagccgtgaaaagcaagttgcgtagccgaggctgcctggagccaaagagtatacttaaa
gttaactggttgttggaatgccaagtaaaagatagaatggtagaaattctaccttgccac
gttgtatgggcaacagattctttaaggaaagagatagaaacacgttgtgattgttggggt
gattcgtggcacaaagcagtgaatgaagaagagttacgtgaacttttgagcaacatgttt
attccagaaagtgttccagacgatgtaaagagtgttattgcgagctgtccagaactgaag
gagattgattatggtggtctttttcgttcttggcatgttattgttgaagactttgggcat
ttttgtgagacggatgctgcagcatatttggtttccttttttggatgtgatttgatagtt
gagaaacaagagaaaatggaagcagaaagttggaatgattcttcttcttattattattat
tatttagtatccaatcaagattctcagtataaagcgcggggtcaagtgcttaccaaagca
atggtttgggaaatggttgaacgacatattttgcgagaatag
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