Gynuella sunshinyii: YC6258_01089
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Entry
YC6258_01089 CDS
T03690
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gsn
Gynuella sunshinyii
Pathway
gsn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YC6258_01089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsn03400
]
YC6258_01089
Enzymes [BR:
gsn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
YC6258_01089
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
YC6258_01089
DNA repair and recombination proteins [BR:
gsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
YC6258_01089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
NhaB
DUF1631
Motif
Other DBs
NCBI-ProteinID:
AJQ93137
UniProt:
A0A0C5VF01
LinkDB
All DBs
Position
1077453..1078268
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AA seq
271 aa
AA seq
DB search
MPELPEVETTRRGLEPHIVGQQVLAVVIRNAALRWPVPTELPSWLEGQRLLRIERRAKYL
LFRFEQGTVLAHLGMSGSMRILSQPMPPEVHDHVELSFGNGSVLRYNDPRRFGAWLYYQE
PDEEHFLLNRLGPEPLSEAFDGDRLFALSRKKKQAVKLFLMDNHVVVGVGNIYANEALFR
AGIRPAVAAGRITRSRYQLLAQAVKTVLQQAIVSGGTTLKDFVNSDGKPGYFAQQLNVYG
RGSLPCKQCAQLLKEIRLGGRTSVYCPQCQQ
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagttgaaaccactcgtcgtggactggagccgcatatcgttggg
cagcaggttcttgctgttgtcatacgtaatgctgcattgcgctggcctgttccgacggaa
ttaccttcctggttagaagggcagcggttgttgcggatcgagcgaagagcgaagtatttg
ctgtttcgttttgagcagggaaccgttctggctcatcttggtatgtccggatccatgcga
attctgagtcagccgatgccgcctgaagttcatgatcatgtggagctgagttttggtaat
ggttcagtgcttcggtacaacgatccccgcagatttggtgcctggttatattatcaggag
cccgatgaagaacattttctgttaaacaggttagggccggaaccgttgtcggaagcattc
gatggtgatcggctgtttgctttgtcacgtaagaaaaaacaggcggtcaaactgttttta
atggataaccatgtggtggttggcgttggcaatatttatgcgaatgaagcgctgttccgt
gcgggaatccggccggcagtagcggccgggcgaattaccaggagcagatatcagttgctt
gcacaagcggtgaaaaccgttctgcaacaagccattgtcagtggtggtaccaccctgaaa
gactttgtgaactctgatggcaaaccaggttactttgcacaacagttaaatgtttatggt
cgcgggtctttgccatgtaaacaatgcgctcaactgctaaaggaaattcgattaggggga
aggaccagtgtctattgccctcaatgtcaacagtag
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