Gavia stellata (red-throated loon): 104257186
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Entry
104257186 CDS
T08384
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste03013
Nucleocytoplasmic transport
gste03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104257186 (UPF1)
03015 mRNA surveillance pathway
104257186 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gste03019
]
104257186 (UPF1)
Enzymes [BR:
gste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104257186 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104257186 (UPF1)
Messenger RNA biogenesis [BR:
gste03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104257186 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104257186 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104257186
NCBI-ProteinID:
XP_009810182
LinkDB
All DBs
Position
Unknown
AA seq
1108 aa
AA seq
DB search
CVYDVSANSCGHPDPQFDSRNVVFGEGTDLAMMLGGSHMLNESVMDKAHGVNVLAKLFER
VVEGGWVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHD
PACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRN
VFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQE
QLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLV
KLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDL
APLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTF
AVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLI
QGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSRE
AIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNA
DVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV
MCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR
VKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQI
GIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGI
GFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESL
MQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMIS
AGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGT
SQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQ
IDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3329 nt
NT seq
+upstream
nt +downstream
nt
agtgcgtttatgatgtttctgcaaactcttgtggtcatcctgatcctcagtttgactcta
gaaatgtagtttttggggagggcacagacctagctatgatgctaggaggcagtcacatgc
tcaacgagtccgtgatggacaaggcacatggtgttaatgtgttagctaagctgtttgagc
gagtggttgaaggaggctgggttaatggacctgatggcattctacagaacggagctgtgg
atgataacgtggctaaaaccagccagcttctggcagagttgaattttgaagaagatgaag
aagatacctattacacaaaggatcttcctgtgcatgcctgcagttactgtggtatccatg
accctgcttgtgtggtttactgtaacaccagcaaaaagtggttctgtaacgggcgtggaa
atacatctggcagccacattgttaaccatcttgtgagagcgaagtgcaaagaggtgactc
tccataaagatggacctctaggagagactgtcttggaatgttataactgtggatgtcgta
atgtgtttctccttggctttattccagctaaggcagactccgtggttgttttgctgtgca
ggcagccatgtgccagtcagagcagtttaaaggatattaattgggacagttcacagtggc
agcctcttatccaggatcgctgtttcctttcatggctggtaaagattccatctgaacagg
aacagttgagagcacgtcagatcacagctcaacagattaacaaactggaagaactttgga
aggaaaatccatctgcaacccttgaggacttagaaaagcctggtgttgatgaagaaccac
agcatgtcctgcttagatatgaagatgcttatcaataccaaaacatatttggtcctctag
tcaagcttgaggcagactatgacaagaaactcaaggagtctcagacccaagataacatca
cggtcagatgggacctgggcttgaacaagaaaagaattgcttatttcactttgccaaaga
ctgattcagatatgcgtcttatgcaaggagatgagatctgcttgaggtataaaggagacc
tggcccctttatggaaaggaattggtcacgttatcaaagttcctgataattatggtgatg
agatagctattgagctgaggagcagcgttggagcacctgtggaagttacccataacttcc
aagtggattttgtatggaagtctacttcatttgacagaatgcaaagtgctttaaaaacat
ttgctgtggatgagacttcagtgtctgggtacatctatcacaaactgttaggtcatgagg
tagaagatgtaattattaaatgccagttgccaaagcgctttacagcacaaggacttcctg
atctcaaccattctcaggtttatgctgtgaagactgtcctgcagcgtcctctgagcctta
ttcagggtcctccgggtaccggaaaaacagtgacatcagccacaattgtctatcacctgg
ctagacagggcaatgggcctgtgttagtctgtgctccaagtaatatagctgttgatcagt
taactgagaagatccatcagactggactgaaagtggttcgtctgtgtgctaaaagtcgcg
aggcaattgactcccctgtatccttcttggcgttgcataaccagatcagaaacatggata
gcatgccagagcttcagaaactgcagcagcttaaagatgaaactggagaactgtcatctg
ctgatgagaaacgttaccgtgcactgaaacgaacagcagagcgtgaattacttatgaatg
cagatgtgatctgttgcacgtgtgtgggagctggtgatccaagacttgcaaaaatgcagt
tccgctccattctgattgatgaaagcacgcaggctactgagccagagtgcatggtgccgg
ttgtcctgggagcaaaacagcttattcttgtaggcgaccactgccagctgggtcctgttg
tgatgtgtaaaaaagctgcgaaggctggcctatctcagtctctcttcgagaggcttgtgg
tgctggggattcgtccgattcgcctgcaagtgcagtatcgcatgcaccctgcactcagtg
cttttccatccaatatcttctatgagggttcactccagaatggtgttaccgcagcggacc
gtgtgaaaaaaggttttgatttccagtggccacagccagataagccaatgtttttctatg
ttacacaaggacaggaagaaattgccagctcaggcacctcttacttgaacaggacggaag
ccgccaatgtggagaagataactacaaagctattgaaagctggtgccaaaccagatcaga
ttggcattattactccttacgaaggtcaacgatcctatctggtgcagtacatgcaattca
gtggttccttgcatacaaagctctaccaggaagtggaaattgcaagtgtggatgccttcc
agggccgcgagaaggactttattatcctttcttgtgtgagggccaatgaacaccaaggaa
tagggtttctgaatgaccccaggcgtcttaatgtagctcttacaagagcaaggtatggag
ttattattgttgggaacccaaaagcactgtctaaacaacccctttggaatcacctgctga
attactacaaggagcagaaggttctggtggagggaccactgaataacctccgggaaagcc
ttatgcagttcagcaagccccggaagcttgtcaataccatcaacccaggtgcccgtttca
tgactactgccatgtatgatgcacgtgaggctataattccaggatctgtctatgaccgga
gcagtcaagggcgcccatccaacatgtacttccaaacccatgaccagatcgggatgatta
gtgctggccccagccacgtcactgctatgaacattcctatccctttcaaccttgtgatgc
caccaatgccaccaccgggatactttggccaggctaatggaccagccgcaggacgtgggg
cgccaaaaggaaagactggtcgtggtgggcgccagaaaaatcgttttgggattcctggaa
ctagtcaatcaaaccttccaaatagtcaagcgagccaagatgtggtgtcccagcctttct
cccagggtccactgactcaggggtatatctccatgagtcagccatcacagatgagtcagc
ctgggctctcccaaccagaattatcacaggacagttaccttggtgatgagtttaaatctc
agattgacgtggcgctgtcacaggactctacttaccagggtgaacgtgcatatcaacatg
gcggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
