Geomonas subterranea: KP001_00540
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Entry
KP001_00540 CDS
T07936
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gsub
Geomonas subterranea
Pathway
gsub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KP001_00540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsub03400
]
KP001_00540
Enzymes [BR:
gsub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KP001_00540
DNA repair and recombination proteins [BR:
gsub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KP001_00540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
SH3_13
UvrD_C_2
AAA_11
HHH_5
Viral_helicase1
PIF1
nSTAND3
Helicase_RecD
NTPase_1
AAA_22
RsgA_GTPase
AAA_16
SLFN-g3_helicase
MeaB
HHH
DEAD
NACHT
HHH_2
T2SSE
AAA_28
UvrD-helicase
AAA_29
cobW
ATP_bind_1
TrwB_AAD_bind
PhoH
AAA
AAA_5
ABC_tran
AAA_14
MMR_HSR1
MobB
DUF4926
NB-ARC
SRP54
AAA_24
ATPase_2
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
QXE91067
LinkDB
All DBs
Position
132344..134536
Genome browser
AA seq
730 aa
AA seq
DB search
MKERSPAEHPVERISGSLERVTFHSEETGFCVLRVKVSGHRDLVTVTGSAASVTPGEFLE
CTGSWHNDRTHGMQFKAEHLKVVPPTTLEGIEKYLGSGMVHGIGHHFAKVLVQAFREEVF
DVIEHRPERLLELPGIGRKRMESVAGAWVEQKAIREIMVFLQSNGLGTARAVRIYKSYGN
EAIFKVTENPYRLALDIHGIGFKTADALAANLGIARDSMIRAQAGVRHVLQELSASGHCA
AARADLAQSAASLLDIPLAVIEAAIDAEITEQNLVAEPIAGRPCVFLAPLHRAEVGVAAA
LSRLSGGTPPWGGIVAEEAIPWVESHNGITLSPSQRDAIRLALKSKVVVVTGGPGVGKTT
LVNSILAIIRSRHLKVTLCAPTGRAAKRLTESTGIEAKTIHRLLEFDPQSFGFKRDRDNP
LPTDLLVMDEASMVDVVLMNKLLPAVPDHAGLIIVGDVDQLPSVGPGSVLADIIDSGAVA
TVRLTEIFRQAAGSRIIVNAHRINRGELPLRDEGKELADFYFIPAATADDIHGKLLQVIT
ERIPKRFGFDPVRDIQVLTPMNRGGLGTGSLNAELQGVLNGKAEPRVTRFGTGFAPGDKV
IQTVNNYEKEVFNGDIGRIVEVRQEEGTLSVDFDERLVEYQFGELDEVSLAYATSIHKSQ
GSEYTAVVIPLSMQHYTMLERNLIYTAVTRGKKLVVVIGEPKALAMAVRTSKSQRRMTDL
ARRICSAPAE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacgatcaccagctgagcatcccgtcgaaagaatttccggctccctggaaagg
gtcaccttccacagcgaggagacgggcttttgcgtgctgcgggtgaaggtttccgggcac
cgcgacctggtgacggtgaccgggagcgccgcgtcggtgacgccgggagagttcctggag
tgcaccggttcctggcacaacgaccggacccacgggatgcagttcaaggcggagcacctg
aaggtggtgccccccacgacgcttgaggggatcgagaaatacctcggctccggcatggtg
cacggcatcggccaccacttcgccaaggtgctggtgcaggccttccgcgaggaggtcttc
gacgtcatcgagcaccgcccggagcggcttttggaactgccgggaatcggccgcaagcgg
atggagtcggtggcgggcgcctgggtggagcagaaggcgatccgcgagatcatggtcttc
ctgcagtccaacggcctcggtaccgcgcgcgccgtgcgcatctacaagagctacggcaac
gaggccatcttcaaggtgaccgagaacccgtaccggctcgccctcgacatccacggcatc
ggcttcaagaccgccgacgccctcgccgccaacctcggcatcgcgcgggactccatgatc
cgggcgcaggcaggcgtccggcacgtgctgcaggaactctccgcgagcgggcactgcgcg
gccgcccgggccgacctggcgcagagcgccgcctcccttctcgacatcccccttgccgtc
atcgaagccgccatcgacgcggagatcacggagcagaacctcgtggccgagccgatcgcc
gggcgcccctgcgtctttttggcaccgctgcatcgtgccgaggtcggggtcgccgccgcc
ctgtcgcgcctctccgggggcacccccccctggggcggcatcgtcgcggaagaggccatc
ccctgggtggaaagccacaacggcatcaccctttccccgtcgcagcgcgacgccatccgg
cttgcgctgaagagcaaggtggtcgtggtgaccggtggccccggggtgggcaagaccacg
ctggtgaacagcatcctggccatcatccgctcgaggcacctcaaggtgaccctgtgcgcc
ccgaccggaagggcggccaagcggctcaccgaatcgaccgggatagaggcgaagaccatc
catcgcctgctggagttcgacccgcagagcttcggcttcaagcgcgaccgcgacaacccg
cttcccaccgacctcctggtgatggacgaggcctccatggtcgacgtggtgctgatgaac
aaactcctcccggccgtcccggaccatgcgggactcatcatcgtgggcgacgtggaccag
ctcccctcggtcggccccggcagcgtcctcgccgacatcatcgattccggcgccgtcgcc
accgtgcgcctcacggagatcttccggcaggccgcgggctccaggatcatcgtcaacgcc
caccgcatcaaccggggcgagctccccctgcgggacgaggggaaggaactggccgacttc
tacttcatccccgccgccaccgccgacgacatccacggcaagctgctccaggtgatcacg
gagcggatccccaagcgtttcggtttcgatcccgtgcgcgacatccaggtgctcaccccc
atgaaccgcggcgggctcggcaccggttcgttgaacgcggaactgcagggggtgctaaac
ggcaaggcggaaccccgcgtgacccgcttcggcaccggtttcgcgccgggggacaaggtg
atccagaccgtgaacaactacgagaaggaagtcttcaacggcgacatcggccggatcgtc
gaggtgcgccaggaggaggggacgctcagcgtcgatttcgacgagcggctggtggaatac
cagttcggcgaactggacgaggtgagcctcgcctacgccaccagcatccacaagagccag
ggttccgaatacaccgccgtggtgatccccctgtccatgcagcactacaccatgctggag
cgcaacctgatctacaccgccgtgacccggggtaagaagctcgtggtggtgatcggcgag
cccaaggcgctcgccatggcggtgcgtaccagcaagtcgcagcgcaggatgaccgacctg
gcgcgcaggatctgcagcgcccccgctgaataa
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