Geomonas subterranea: KP001_16080
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Entry
KP001_16080 CDS
T07936
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gsub
Geomonas subterranea
Pathway
gsub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KP001_16080 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsub03400
]
KP001_16080 (ligD)
Enzymes [BR:
gsub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KP001_16080 (ligD)
DNA repair and recombination proteins [BR:
gsub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KP001_16080 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QXE89930
LinkDB
All DBs
Position
3696820..3699390
Genome browser
AA seq
856 aa
AA seq
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MGLEEYQRKRDLSKTPEPHGKGGRSVREWRFVVHKHAASHLHYDFRLEMDGVLKSWAIPK
GPSLDPSVKRLAMMVEDHPYEYGDFEGVIPKGNYGAGEVIIWDAGTFHAAGSEDPEQGLE
LLREGLRKGDLKFVLHGEKLNGEFALVRIKSDKGNSWLLIKKHDRFAGSDDVTRLERSVV
SNATIEDVRAGRMPQRPPVRLSVSDQPDMTGASPLALMPRQLAPMLATSAAEPFDDPDWL
FEIKLDGYRAIAEVAGQDVALYSRNNLSFNKKFPTVVAALASLGVEAVFDGEVVVLDETG
RSYFQLLQNYQRTGRGNIAYFIFDLLYLSGEDLRNRPLLARKERLRALLPDLPDLRYSDH
VMESGKEFFELARQNNLEGILAKRAASLYQAGKRSREWLKIKVRLQQEAVICGFTQPRRS
RKGLGALVLGVYEDDRLVCIGFAGGGFDEAGLKEMYDLLQPLVQDGSPFQQPVKSDMPIT
WVRPELVCEVEFSEWTDENVMRQPVYLGLREDKEPKSVVREMVASPPAPPQRAADAPPPI
LPRQAGGKGASGKKGQEEIIILDGHRLELSNLDKVFWPDQGYTKGDVINYYRSVAHAMLP
HLVDRPESLYRTPNGIAGPGFFQKEAGELPPSWITTREIYSKHVDKNIKFFVCQDEATLV
YMANLGCIEINPWLSRLQHLDYPDYFVIDLDPEDIPFAKVIETALAVREVLDRAGAVSFP
KTSGATGIHIYVPLGARYDYDAAVEFARVIATLVHHKAPDFTSILRSPKLRQKKVYLDYL
QNKPGQTLAAPYSIRPRPGATVSTPLTWEEVNPGLDPGRFTIATMPGRLEQLGDLFAGVL
GPGIDLEQCIENLERG
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgggactggaggagtatcagcgcaagagggacctgagtaaaacgcccgagccgcatggc
aaaggcggccgttccgtgagggaatggcgtttcgtggtccacaagcacgcggcctcccac
ctgcattacgattttcgcctggagatggacggggtgctgaagagttgggcgatacccaag
gggccgtcgctcgatccgtcggtgaagcgtctcgccatgatggtcgaggatcacccgtac
gagtacggcgatttcgagggggtgatcccgaaagggaactacggcgccggcgaggtgatc
atctgggatgccgggaccttccatgccgccgggagtgaggacccggaacagggtctcgag
cttttgcgcgaggggctgcgcaaaggggacctgaagttcgtcctgcacggcgagaagctg
aacggagagttcgccctggtgcgcatcaagagcgacaaggggaattcctggctcctgatc
aagaagcacgaccgctttgccggcagcgacgacgtgacgcggctggagcgctcggtggtg
agtaacgccaccatcgaggacgtccgggcgggcaggatgccgcagcgcccgccagtccga
ctgagtgtgtcggaccagccggacatgaccggcgcttccccgctcgccctcatgccgcgc
cagctcgccccgatgctggccacctccgccgccgagcccttcgacgacccggactggctc
ttcgaaatcaagctggacggctaccgcgccatcgcggaagtcgccggccaggacgtggcg
ctctactcgcgcaacaacctatccttcaacaagaagttccccaccgtggtggcggcgctc
gcctccctcggtgtcgaggcggtcttcgacggcgaggtggtggtgctggacgaaaccggc
cgctcctatttccaactgctgcagaactaccagcgcaccggccgcggcaacatagcctac
ttcatcttcgacctcctctacctgagcggcgaagacctgcgcaaccggccgctgctcgcc
cgcaaggaaagattgcgcgccctgcttcccgacctccccgacctccgctacagcgaccac
gtcatggagtcgggcaaggagttcttcgagctcgcgcgccagaacaacctggagggaatc
ctggccaagcgcgccgcgagcctgtaccaggccgggaaaaggagcagggagtggctgaaa
atcaaggtgcgactgcagcaggaggcggtcatctgcggcttcacccagccgcgccgcagc
cggaaagggctcggggcactggtgctcggggtctacgaggacgaccggctagtctgcatc
ggcttcgccggaggagggtttgacgaggcgggtctcaaggagatgtacgacctgctgcag
ccgctggtgcaagacggatcaccgttccagcaaccggtcaagtccgacatgccgatcacg
tgggtgcggccggaactggtctgcgaggtggagttctccgaatggaccgacgagaacgtg
atgcgccaaccggtatacctgggactgagggaggacaaggaaccgaagagcgtggtgcgc
gagatggtcgcctcccccccggcgccgccgcagcgcgccgccgatgcgcccccccctatc
cttccgcgtcaggcgggcggcaaaggggcgagcggtaagaaagggcaggaagaaatcatt
atcctggacggccaccggctcgagctttccaaccttgacaaggtgttctggccggaccag
gggtacaccaagggtgacgtcatcaactactaccggagcgtggcccacgccatgctcccc
cacctggtcgaccgtccggagtccctgtaccgcacccccaacggcatcgccggccccggt
ttcttccagaaggaggcgggcgagctgcccccttcctggatcaccacccgcgagatctac
tccaagcacgtggacaagaacatcaagttcttcgtctgccaagacgaggcgaccctggtc
tacatggccaacctcggctgcatcgaaatcaacccatggctgtcacgcctgcagcacctc
gactacccggactacttcgtcatcgacctcgaccccgaggacatccccttcgcgaaggta
atcgagacggcgctggcggtccgggaggtgcttgaccgggccggcgccgtcagcttcccc
aagacctccggcgcaaccgggatccacatctacgttccgctgggtgccaggtatgactac
gatgccgccgtcgagttcgcccgggtcatcgccaccttggtgcaccacaaggcccccgac
ttcaccagcatcctgcgcagccccaaactgcggcagaaaaaggtctacctcgactacctg
cagaacaagccgggacagaccctggcggcaccctacagcatccgccccaggcccggggcg
accgtgtcgaccccgcttacgtgggaggaggtgaacccaggcctcgaccccggccggttc
accatcgccaccatgccgggacggctggagcagctgggggacctgttcgcgggggtgctg
gggccgggaatcgatctggagcagtgcatcgaaaacctggagcgggggtag
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