Gordonia terrae: BCM27_23555
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Entry
BCM27_23555 CDS
T04440
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gta
Gordonia terrae
Pathway
gta03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BCM27_23555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gta03400
]
BCM27_23555
Enzymes [BR:
gta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BCM27_23555
DNA repair and recombination proteins [BR:
gta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BCM27_23555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANY26326
UniProt:
A0A4V0B5U0
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All DBs
Position
5312365..5314740
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AA seq
791 aa
AA seq
DB search
MAGGESLEVDGRRISITNLSKVLYPASGTRKFEVIDYYSRIADVLLPHIRNRLITRKRWP
SGVESTPFFEKNVPDSAPDWIRRHGIQHSERVISYAMADDRATLVWLAQMAVLEIHTPQW
RLPMGPDGAPMANRIVFDLDPGPRVPLHRTAEVACEIRNWLGGTTTYPVTSGGKGIHLYA
RLPKPVTSDAARKVAQEVANEFARQHSDFITAKMSKSLRDDKVFIDWSQNTAAKTTLAPY
SMRGREQPWVAAPRTWEEIEDPGLSQLLYTEVLDRVEEFGDLLDGLDDPYDDEPAATVEQ
AQSAGQVINLKEYRRKRDQSKTPEPFGDEVHRQRIEAESLPEVTDSAESTTDRAPIFVIQ
EHHARRLHYDFRLEHDGVLVSWAVPKNLPTDPDQNRLAVQTEDHPMDYADFEGDIPAGEY
GGGHVSIWDKGTFELEKWRDKEVIVRLHGERAQGRYALIRTGEKNWLAHLMSDEPRPIVP
DSLTDPRPMLATDESIDGLNGRDWAFEGKWDGYRLLIRSVGGEFRLTSRSGIDMTADFPE
LAGLADDLGLMDVVLDGEVVAIDSSGRTNFTLLTSRRHTDEPYSLRLHLFDILFLNGSSL
LRKPWSVRRELLEELAPAFRNSAFVEVPPLLPGPGSAAVEYSREHNLEGVVAKRRNSVYQ
QGRRSTTWLKHKNWSDIEVVVGGFRPGRGNRSHTIGSLLIGLPEETGLRYVGRVGTGFTD
AQLRSLAEELGPLEISRSPFLDKLDRPVASSAVWVLPKIVGEVRFMDWTTAGHLRHPSWR
GIRRDKLPGDL
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcggcgagtctctggaggtcgacggccgccggatctcgatcaccaatctctcg
aaggtgctctatccggcgtcgggaacccgcaagttcgaggtcatcgactactactcgcgt
atcgccgacgtcctgctcccccacatccgcaatcgcctcatcacccgcaaacggtggccc
agcggcgtcgaatcgacgccgttcttcgagaagaatgtccccgacagcgcaccggactgg
attcgacgccacggcatccagcacagcgagcgggtcatctcctatgcgatggccgacgat
cgcgccacgctggtctggctcgcccagatggcggtgctcgagatccacacaccgcagtgg
cggctacccatggggcccgacggcgcgcccatggccaaccgcatcgtcttcgacctcgat
cccggtccacgggtgccgctgcaccggaccgcagaggtggcgtgcgagatccgcaactgg
ctcggcgggacgacgacgtacccggtgaccagcggcggcaagggcatccacctctatgcg
cggctcccgaagcccgtgacgtcggatgcggcgcgcaaggtggctcaggaggtcgccaac
gagttcgcccgtcagcacagcgatttcatcaccgccaagatgtccaaatcgctgcgcgac
gacaaggtcttcatcgactggagccagaacaccgccgccaagaccactctcgcgccatac
tcgatgcgcggacgcgagcagccgtgggtggccgcgccgcgcacctgggaggagatcgag
gaccccggactctcccaactgctctacaccgaggtgctggaccgcgtcgaggagttcggc
gatcttctcgacggtctcgacgacccctacgacgacgagccggcggccaccgtcgagcag
gcgcagtcggccggccaggtcatcaatctgaaggaataccgtcgcaaacgcgaccagtcg
aagacgcccgagcccttcggtgacgaggtgcaccggcagcgcatcgaagccgaaagcctc
ccggaagtaaccgactccgctgaatcgacgacggaccgggcgccgatcttcgtgatccag
gaacatcacgcccggcgattgcactacgacttccggctcgaacacgacggggtcctggtg
tcgtgggccgtacccaagaacctgcccaccgaccccgatcagaaccggctcgcggtacag
accgaggaccatccgatggactacgccgacttcgaaggcgacatcccggcgggcgagtac
ggcggcggtcacgtgtcgatctgggacaagggcacattcgagctcgagaagtggcgcgac
aaggaggtcatcgtccgcctccacggcgagcgggcgcagggccggtatgcgttgatccgg
accggcgagaagaactggctggcccacctcatgagcgacgagccgcgtccgatcgtcccc
gacagcctcaccgacccgcgccccatgctggcgaccgatgagtcgatcgacgggctcaac
ggtcgcgactgggcgttcgagggcaagtgggacggataccggttgctcatccgctcggtc
ggcggcgagttccggctcacctcgcgatccggtatcgacatgaccgccgacttccccgaa
ctcgccggtctcgcagacgatctcgggctcatggacgtggtactcgacggtgaggtcgtc
gcgatcgactcctccggccgcaccaacttcacgctcctgacctcgcgccggcacaccgac
gagccgtactcgctccggttgcacctgttcgacatcctgttcctcaacggctcgtcgtta
ctgcgcaaaccgtggtcggtccgccgtgaactgctcgaggaactggcacccgcgttccgc
aactcagccttcgtcgaggttccgccgctgcttcccggtccgggttcggccgccgtcgag
tacagccgcgaacacaatctggaaggcgttgtcgccaaacgtcgcaactccgtgtaccag
caggggcgacggtcgacgacgtggctgaaacacaagaactggagcgacatcgaggtcgtc
gtcggcgggttccgaccggggcgcggcaaccgctcccacaccatcggctcgttgctgatc
ggtctgcccgaggagaccggattgcgctacgtcggccgcgtcggcaccggtttcaccgac
gcgcagctgcgttcgctcgccgaggaactcggcccgctggagatctcgcggtcgccgttt
ctcgacaaactcgaccgacccgtcgcgtcgagcgcggtgtgggtcctgcccaagatcgtc
ggcgaggtccgtttcatggactggacgacggccgggcatctgcggcatcccagctggcgg
gggatccggcgggacaaacttcccggcgacctctga
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