Gloeophyllum trabeum: GLOTRDRAFT_105016
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Entry
GLOTRDRAFT_105016 CDS
T03130
Name
(RefSeq) TFIIH basal transcription factor complex, subunit SSL1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03022
Basal transcription factors
gtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GLOTRDRAFT_105016
09124 Replication and repair
03420 Nucleotide excision repair
GLOTRDRAFT_105016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtr03021
]
GLOTRDRAFT_105016
03400 DNA repair and recombination proteins [BR:
gtr03400
]
GLOTRDRAFT_105016
Transcription machinery [BR:
gtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GLOTRDRAFT_105016
DNA repair and recombination proteins [BR:
gtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GLOTRDRAFT_105016
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
19298678
NCBI-ProteinID:
XP_007864590
JGI:
Glotr1_1_105016
UniProt:
S7RW47
LinkDB
All DBs
Position
Unknown
AA seq
446 aa
AA seq
DB search
MAPRKDIDYMDGESDSDVDVIDDSGDRGKKGKGKAIDRRKKDKGKGKSSEQPYAWEASYT
RSWDTVQEDEAGSLTSAVADLVARGRRRRLLAPANAIRRTIIRHLIIILDLSASMLDRDM
RPTRFGLTLEYAREFIVEWFDQNPLGQIGLVGMRAGLGERLSEMSGNPQDVLKALSERHK
LEPAGEPSLQNAIDMARTSMSHLPTHSSREILIIFGSLTTVDPGNIHDTLDACIRDRIRV
SVVALAAEMKICREFCDKTGGQFGVAMNEGHFKDLLFELIPPPAQRALSRAAGAGATNLA
ADLMMMGFPVRLPDTSPPTLCVCHSELKSEGFLCPRCSAKVCDVPTDCDICGLMIVSSPH
LARSYHHLFPVKPYQAVTTLDDTSTPAKSCHACARSFPEAAATNVATTEGLSPLGRYRCP
DCHHDFCTDCDVFVHDVVHCCPGCGK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggctccgcgaaaggacatagactacatggatggagagtccgattctgacgtggacgtc
atagatgattctggcgaccggggtaagaaaggcaagggcaaggcgatagacagaagaaag
aaggacaaagggaagggaaagtcgagcgagcaaccctatgcttgggaagcgtcttatacg
aggtcttgggacactgtacaagaggatgaagcaggcagtttaacaagtgctgtggcggac
ttggttgcacgaggccggcgtaggaggctactcgctccagctaatgcaatccgtcggaca
attatccgtcaccttattataattttggatctctccgcctccatgctggacagggacatg
cggccaacaagatttggtctaacgcttgagtatgctcgggagttcatagtggagtggttt
gaccagaatcctctgggccagattggactggtaggcatgcgtgctggcctcggtgagcgg
ttgagcgagatgtcggggaacccgcaagacgtcctcaaagctctctcggagagacataaa
ctggaaccagccggggagcctagtctacaaaatgccatagacatggctcgcactagcatg
agtcatctacctacccattcgtctcgcgagatattgattatcttcgggtccttgacaacc
gtcgatcctggaaacatccacgatactctggatgcatgcatccgagacaggatacgtgtt
tccgtggtagcacttgctgcagagatgaaaatctgccgagagttctgcgataaaacgggc
ggacagttcggagttgcgatgaatgaaggccatttcaaagacctcctgttcgaacttatc
cccccgccagcgcagcgcgctctgtcccgcgctgctggggcaggggcgacaaatcttgcg
gctgacctcatgatgatgggtttccctgttcgcttacccgacacctcgccgcccaccctc
tgtgtctgtcattccgaactgaaaagtgaaggcttcctctgtccaagatgttcagccaaa
gtctgcgatgtccccaccgactgtgatatctgcggcctgatgatcgttagttcgcctcat
cttgcacgaagttatcaccatctattccccgtcaaaccgtatcaagcggtaactacactc
gatgacacctctacaccagctaaatcgtgccatgcttgcgctcggtccttcccagaagct
gccgctaccaatgtagccacaactgaaggattgagtcctctaggtcggtaccgttgtcca
gactgccaccatgacttctgtacagactgcgacgtctttgtccatgatgtcgtccactgc
tgtccgggctgcggcaagtaa
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