Gloeophyllum trabeum: GLOTRDRAFT_69469
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Entry
GLOTRDRAFT_69469 CDS
T03130
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GLOTRDRAFT_69469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gtr03041
]
GLOTRDRAFT_69469
Enzymes [BR:
gtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GLOTRDRAFT_69469
Spliceosome [BR:
gtr03041
]
Complex C
Other components
Step II factors
GLOTRDRAFT_69469
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
AAA_22
nSTAND3
ATPase
T2SSE
ABC_tran
AAA_19
AAA_30
AAA_24
AAA_16
SRP54
PhoH
TrwB_AAD_bind
NACHT
Motif
Other DBs
NCBI-GeneID:
19307982
NCBI-ProteinID:
XP_007861408
JGI:
Glotr1_1_69469
UniProt:
S7S5D5
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MASPPPPTNGANGQESHDEDFNHHIAIKLSRALNIVNPNDLLARRVQDIAKTNTLEGFIQ
AAKAFGKFKDSFLAELHGEITRHAEQEAAGLKPQEVKGITVHDSEVLQPEPVREGGLMRK
DARHAFKAPNKKLEPPTPRTSVLGLDRLAQEKRAAKAAEEGGSRKKARLDGPDEPMFKVP
NLPASRGTMRQKGEETPSHPGGLSETGRKRLEEYRKSRDKQREGIAAYNERRDDGPRGLG
DFKRRLNREPGYDRRGRRGWDETPRSERGSREDAPSVRIPNAAWDSTPRNAQGEDGQGWG
GARNRRWDAPTPRVARAGSPEDGEGAFGIDAREWEEEQIQLDRDWYAGAEEGNLMGDEEH
NPLAQYDDLESIRQAEIETKKVKKVSARQAQYNADNDLWEANRMVTSGVATRKALDLDFE
DESESTVHVMVHDLKPPFLDGRTVFTKQLDPINPIRDPTSDMAIFSKKGSALVKEKREQA
ERAKAAAKLAALGGTALGNIMGVRDEEGEADAESQAKDKAGVKEDYKGESKFASHLKEQA
GVSSFARNKTLKEQREYLPAFACREELLKVIRENQVIVVVGETGSGKTTQLAQFLYEDGY
CTHGIIGCTQPRRVAAMSVAKRVSEEMECKLGSTVGYAIRFEDCTSPETKIKYMTDGVLL
RESLNEGDLDRYSVIILDE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacccccgccgccgactaacggagctaatggacaggagagtcacgacgaagac
ttcaatcaccacattgccatcaagttgtctcgcgcgttgaacatcgtgaacccaaatgat
ctcctggccaggcgggtgcaggacattgcgaagacgaacacgttagagggcttcatccaa
gctgcaaaagcctttggtaaattcaaagactccttcctagcggagctacatggggaaatt
acgagacacgccgagcaggaggcagcggggctgaagccgcaagaagtgaaggggatcact
gtgcatgacagtgaggttctgcagccggaacctgtgcgggagggcgggctgatgcgcaag
gacgcgcgccatgcgttcaaggcgccgaacaagaagctcgaacctccgacgccgagaacg
tctgtccttggtctggataggctcgcgcaggagaagcgggctgctaaggctgctgaagag
ggtggtagtaggaagaaggcgaggttggacggaccggacgagcctatgttcaaagtcccc
aacctccctgcatctcgcggcactatgaggcagaagggcgaggagacgccctcgcatcct
ggtgggctgtctgagacgggtcggaaacggttggaggagtatcgcaagagtagggacaag
cagcgagagggtattgctgcatacaacgagcgcagagatgacgggcctcgcggactggga
gacttcaagcgtcgactcaaccgagaaccagggtacgacaggcgtggtcgacgtggctgg
gacgagactccgagatccgaaagaggatccagggaggacgcgcccagcgttcgcattccg
aacgccgcctgggactctacccctcgtaatgcgcaaggcgaggacgggcagggttgggga
ggcgcgcggaatcgcagatgggatgcgcctactcctcgcgtagcgagggcaggcagtccc
gaggacggggaaggtgcgtttggcatcgacgcgcgcgagtgggaggaggagcagatccag
ttggatcgcgattggtatgctggcgcagaggaagggaacttgatgggagatgaggagcac
aatcccttggcgcagtatgatgatttggagagtatacggcaggcggagattgagaccaag
aaagtgaaaaaagtgtcagcccggcaagcgcaatataacgcagataatgacctctgggaa
gcgaaccgtatggtcacgtctggcgttgccactcggaaggcactggatctcgatttcgag
gatgaatctgagtctactgtgcatgtcatggtgcatgacctgaaacctcctttcctggac
ggtcgtactgtgttcacaaagcaattggacccgatcaaccccatccgagacccaacgagc
gatatggccatcttctccaagaagggtagcgctctcgtcaaggagaagagagagcaggcg
gagcgcgccaaggcagcagcgaagcttgcagcgctgggcggaactgctcttggaaatatc
atgggcgtgcgggacgaggaaggcgaagccgacgctgagtcgcaggcgaaggataaggct
ggcgtgaaggaggactataagggcgagtcaaagtttgcgagccatctgaaggaacaggct
ggtgtgagttcgttcgcgaggaataagacgctgaaggagcagcgggagtacttgcctgcg
tttgcgtgccgcgaggagctgctgaaggtcattcgcgagaaccaagtcatcgtcgtcgtc
ggcgagacgggctcgggaaagaccacccagttggcgcagttcctgtacgaggacggctat
tgcacccacggtatcataggctgcacgcaacctcgccgggtggctgctatgtctgtagcg
aagcgggtcagcgaggagatggagtgcaaactgggcagcactgtgggatatgccattcgt
tttgaggattgcacatctccggagacgaagattaaatacatgactgacggtgtcctgctt
cgagagtccttgaacgaaggtgacctagatcggtacagcgtcatcattttggatgag
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integrated database retrieval system
