Guillardia theta: GUITHDRAFT_111041
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Entry
GUITHDRAFT_111041 CDS
T02925
Symbol
LigIV
Name
(RefSeq) Lig4/DNL4/DNA ligase IV non-homologous end joining DNA repair
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gtt
Guillardia theta
Pathway
gtt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GUITHDRAFT_111041 (LigIV)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gtt03400
]
GUITHDRAFT_111041 (LigIV)
Enzymes [BR:
gtt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GUITHDRAFT_111041 (LigIV)
DNA repair and recombination proteins [BR:
gtt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
GUITHDRAFT_111041 (LigIV)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
BRCT
BRCT_2
DNA_ligase_IV
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
17299645
NCBI-ProteinID:
XP_005829974
JGI:
Guith1_111041
UniProt:
L1J4D5
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MADRGSLRWKKLCDFFERNSRQTKRNRKEESIAGLLKEHRSRAPKGADMGSHMYQLIRIL
LPQFDREEMGANVSYNMKELSLAQRFIEALSLNKKCEDAQRLLGWKQPIAGEGMGNFSLV
LENVLRPRTESNEEGKMTLGDVNAFLDQLSENASNSKRQAILLAELLIRASAYEIRWIAR
VILRELKAGLSEKLVLNAFHPDAMEFFKINTNLREVVNKCKDPKVRLNKINIDYFQPFNP
MLAEKVTDLQAVPEYFKNRVFWIENKFDGERIQIHKCFDRLSCYTRRGNDYTELYQPLLD
ILRREKLIAAERCILDGEVVGWNFDQQKWEKFGTNKSIAMRMGNDGDDWEKPRQMSSSDF
ANSGATKSTLCFVVFDIVCEGDTVMTDWPLKERRERLVEIIREKEKIVEIVKHVEASDSG
EVYKKLEEALETEEEGIVLKNPESKYVPKSREKGEWMKLKPDYLGGSEEFDLLIVGGTYG
KGQRGGQVWQFICAVADEPREKGKPPSCFRTMCRVGTGKTREEFMQLFNLLKENMRPYKR
LTQGKTAVDRDVKFERKQDFTSVQWQQKDGADPVEVLFSGNAKEEVDVVFDPRKSRVLTL
VADYRLIESNVFMAARGVEGKDDKTGWTLRFPRIREGGYRCGEMGGDEKPWFDCMTSRQF
EEAIARSQQPYHIHEMQAFNKAKGGKKRKLSQSTGRRTRGARVIEDAAFSGNSYEAKYDV
FKGMEICVLPGDPEQKRETEQLARELGATMVANIDSLTTHIIGMRMDQRFKNLKEADCDV
IGRHWVSECSEKKRLVELAPRHMMHASAARRKEFHNLYDKFGDSFTERCTEKELDLLLDD
PQDPKTWEDLFDVHSDGEIDDEEMKELEDSLATPYKSLNWSSLRGDRVLSLRSDDASNFA
RDWLEACKILWKSRGCVIEEKSVKDMQKDGRWMPSLRDYDVLLVDNEQLIKELQRQGVRA
RFLSPACDINLEGRE
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggggcagcttgcggtggaagaaactctgcgacttcttcgagcggaattcg
cgacaaacgaagaggaataggaaggaggaatcgatcgctggcctgctgaaagagcacagg
tcaagagctcccaagggcgcagacatgggctcccacatgtaccagctgatcagaatcttg
ctgccgcagttcgatcgtgaggagatgggcgccaacgtctcctacaacatgaaggaattg
tcgctcgcccaacgattcattgaagccctctctctcaacaagaagtgcgaggatgctcaa
cggttgctgggatggaagcagccgatagcgggggaagggatggggaacttctctctcgtc
ctcgagaacgtgctgaggccgagaacggaatcgaacgaggaggggaagatgaccctggga
gacgtgaacgcattcctggatcagttgagcgagaatgcaagcaactccaagaggcaagcg
atccttctggcagagctcctgatccgagccagtgcgtacgagattaggtggatagcccgg
gtgatcctccgagaattgaaagcaggcttgtccgagaaactcgtgctcaatgcttttcat
ccagacgccatggaattcttcaagatcaacacaaatcttcgtgaggttgtgaacaagtgc
aaggatccaaaagtgcgtttgaacaagatcaacatcgactactttcagcccttcaatccc
atgttggcagaaaaggtcactgatctgcaggctgtaccagagtatttcaagaatcgagtg
ttttggattgagaacaagttcgatggtgaaaggattcagatccacaagtgttttgatcga
ctctcctgctacacgaggagggggaacgactatactgaactctaccagccgttgctggat
atcttgaggagagagaagttgatagctgcggagagatgcatcctcgatggtgaggtggtg
ggttggaactttgaccagcagaagtgggaaaagttcggtacgaacaagtcgatagcgatg
agaatggggaatgatggcgatgattgggaaaagccccgccagatgtccagctccgatttt
gcaaactctggagccacaaagagcaccttgtgctttgttgtgtttgacattgtttgcgag
ggagacacggtaatgactgactggccgctgaaggagaggagggaacgacttgttgaaatc
atccgggagaaagaaaagatcgttgagatagtcaagcacgttgaagcctctgacagcgga
gaagtgtacaagaagcttgaagaggctttggaaacggaggaggaagggattgttctcaag
aacccggagtcgaagtacgttccgaagtcgagagagaagggagagtggatgaagctgaag
cctgactatctcggagggtcggaagagtttgacttgttgattgttggaggaacttacggg
aaaggacagcgaggagggcaggtgtggcagttcatttgtgctgttgcagacgaacctcga
gaaaagggcaagccgccctcgtgcttccgcaccatgtgcagagttggaacggggaagaca
agggaagagttcatgcagcttttcaacctgctcaaggagaacatgaggccctacaagcgc
ctcacgcaagggaagacggctgtagaccgggatgtgaagttcgagaggaagcaagacttt
acttccgtccagtggcagcagaaagacggcgctgacccggtcgaggttctcttctcgggg
aacgccaaagaggaggtggacgtcgtctttgatccaagaaagagtagggtgctgaccctg
gtggccgactatcgtctcatagagtccaacgtattcatggcagcccggggggttgaagga
aaggacgacaagaccgggtggacgctccggttccctcgcatccgagagggcggatatcgg
tgtggcgagatgggtggagacgagaagccctggtttgactgcatgacgtcccggcagttc
gaggaagccatcgctcgatcgcagcagccgtatcacatccacgagatgcaggcctttaac
aaggccaagggagggaagaagcgcaagctgagccagtccacgggtagaaggacgcgaggc
gcacgagttatcgaggacgcagcgttcagtggcaacagctacgaggcaaagtacgacgtg
ttcaaggggatggagatatgcgtgctgcccggagatcccgagcagaagagggagacagag
cagctggctcgggagctgggagcgacgatggtggcaaacatcgacagcttgacaacgcac
atcatcgggatgaggatggatcagcgttttaagaacctcaaggaggctgattgtgacgtc
atcgggaggcattgggtgtccgaatgctccgagaagaagcggctggttgaactcgccccc
cggcacatgatgcatgcttctgctgctcgcaggaaggagttccacaacctttacgacaag
ttcggcgacagcttcacagaaaggtgcaccgagaaggagctggatttgcttcttgacgat
ccccaagaccccaagacgtgggaggatctgttcgacgttcacagtgacggcgagatcgac
gacgaggagatgaaagagctcgaggatagcctggcgaccccctacaagtcgttgaactgg
tcaagtctgaggggagatcgcgtccttagcttgcggtccgatgacgcgtcaaactttgca
cgagactggctggaagcttgcaagatcctctggaagagcagaggctgtgtcatagaggag
aagtcggtcaaagacatgcagaaagatggtcgctggatgccaagcttacgcgattatgac
gtactgctcgtggacaacgagcagctgatcaaggagcttcagcggcaaggcgtcagagct
cgtttcctttctcctgcctgtgacatcaacttggaaggaagagaataa
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