Geotalea uraniireducens: Gura_0140
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Entry
Gura_0140 CDS
T00521
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gur
Geotalea uraniireducens
Pathway
gur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gura_0140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gur03400
]
Gura_0140
Enzymes [BR:
gur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gura_0140
DNA repair and recombination proteins [BR:
gur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Gura_0140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABQ24356
UniProt:
A5GDJ7
LinkDB
All DBs
Position
192799..196278
Genome browser
AA seq
1159 aa
AA seq
DB search
MTAILTPNINQLVSALSTAEASISIAGLKGSAPAYVLSRLLVGVKKNFLIITSDAESAEE
LCRELRFYSGREDAVLYFPPWDTAPFESASPHADITGQRLNVLFRLMDGRADAVVTSLPA
VMQKLLPRKTLGEISQYIVAGEEVAREKLLEKLVKLGYSHVPLVEDRGGFSIRGGILDIF
PPDLPAPVRIEFFGDFVDTIRTFDPATQRSLQPLEELVLLPSREVVISEEVLKEFPPRLK
KRCDAIEIPATRRRDLLEQLQNAIYPPGVEYLQPLFHPGLETLFDYAGKELVKVIYDPAA
MAAARERFIEELSAAEQRAFERDVISCETAELFLDADSITKILSEGRRLAIPFLEVRGTG
EIGETFRLAVQDNSDLKLEVSSDGEGVLKPLVEKVLSWLAAKNQVLMACHQRGQAQRLYE
ILSHYDLPLNISEREFPAELGRKDNRLDILVGDISRGFRLPEEGLVVIAEEEIFGVRVKR
RGLSEARKKQLLTSLAELKPGDYMVHIDFGVGIYRGLQHLTFDRMEGDFLLLEYAGADKL
YLPVDRINLVQRYVGAEGVEPHVDKLGGAGWEKTKARARAAIQEMAGELLKIYAARQVEE
GHAFSPQDELYQEFEASFAFEETPDQQAAIEDVLHDMESKRPMDRLVCGDVGYGKTEVAM
RGAFKAVMDGKQVALLVPTTILAQQHMETFAERFKAYPVKVEMLSRFRSAKEQKAILEGV
KKGEVDIIIGTHRLLQKDVVFKDLGLLIIDEEQRFGVSHKERLKQFRAVVDIMTLTATPI
PRTLYMSLMGIRDLSIIDTPPVDRLAIKTFVARSSDELIREAVLRELRRGGQVFFVHNRV
QTIGAMAEHLQQIVPEARIAVGHGQMDEKELERVMLGFMHGETNLLLCTTIIESGLDIPT
ANTLIVSRADTFGLSQLYQLRGRVGRSKQRAYAYLLIPGEGAISADARERLKIIQELTEL
GAGFRIATHDLEIRGAGDLLGARQSGDIAAVGFELYTELLEEAIRQLKGEELAERVEPEI
KLRIPAFVPEDYVREPNQRLIIYKKLSQATSEEDIGEIMAELVDRFGKLPLAATYLLEVM
RLRVTLKAMLVKEIEFDGKRLVLSFHQKTPVPPDTIIALIRQQPKKYQFTPDFRLYAELA
DTSFDGILGEARNLLKRLG
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctatccttactcctaatataaaccagcttgtctctgccctttccactgccgag
gcctctatctccattgccggcctcaagggctcagcaccggcctatgtcctgtcgcgatta
ctggtcggggtgaaaaagaactttcttatcatcacgtcagatgcagaaagcgccgaagaa
ctgtgccgcgaattgcgcttttacagcggccgggaagacgccgtcctgtatttcccacca
tgggacaccgcaccttttgaaagcgcatctccccatgcggacattaccggccagcggctg
aatgtgttgttccggctgatggacggcagggcggacgcggtggtgacatcactgccggcc
gtgatgcaaaagctcctgccgcgcaagacccttggggagatttcccagtacatcgttgcc
ggtgaagaggtggcgcgggagaaactgctggaaaagctggtgaagctcggttattcgcac
gtaccactggtggaggatcggggcggcttttccattcgcggcggcatcctcgacatcttt
ccccctgacctgccggcgccggtcagaatcgagttcttcggcgattttgtcgataccatc
cgcaccttcgaccctgccacgcaacgctcccttcagccattggaagagctggttctcctc
ccttcgcgggaggtggtgatctctgaggaggtcttgaaggagttccccccgcgcctgaaa
aaacgctgcgatgctattgagattccggcgacccgccgtcgggacctgctggagcagctg
cagaacgccatatacccgccgggggtggaatacctccagcccctgttccatccaggactt
gagacccttttcgattacgccggcaaagagctggtcaaggtgatctatgaccccgcagcc
atggccgctgcccgggagcgcttcatcgaagagctgtctgctgcagagcagagggcattc
gagcgggacgtcatcagctgcgaaacagcagaattgtttctcgatgcagatagcataacg
aagattctttcagagggtcgtcgactggcgattccttttctggaggtgcgcggcaccggc
gagatcggagaaaccttccgccttgcggtgcaggataacagcgatctcaaacttgaggtc
tccagcgatggcgagggggtgctgaaacccctggtggaaaaggtcctctcctggcttgcg
gcgaagaaccaggtgctcatggcctgtcaccagcgtggtcaggcccaacggctctatgaa
atcctttcccattacgatctccctctcaacatctccgagcgcgagtttccggcggagctg
gggcgtaaagacaaccggctcgatattcttgtgggagacatttcccgcggtttccgcctc
ccggaagaggggttggttgtcattgccgaggaagagatctttggcgtcagggtcaagcga
cgcggcctttccgaggcccggaaaaaacagctgctcacctccctcgccgaactgaagcct
ggcgactacatggtgcatatcgacttcggcgtcggcatttaccgcggtctgcagcatctg
accttcgatcggatggagggggattttctcctcctggaatacgccggtgcggacaagctc
tacctgcccgtcgatcggatcaaccttgttcagcgctatgtgggtgccgaaggggtcgag
ccccatgtggacaagctgggaggcgccggctgggagaagaccaaggcccgggcccgggcc
gccattcaggagatggcgggggaactgctgaagatttacgctgcgcggcaggtggaggaa
gggcatgccttctctccccaggacgaactctaccaggaattcgaggcatcctttgccttc
gaggagacaccggaccagcaggcggcgatcgaagacgtgctgcacgatatggagagcaag
aggccgatggatcgcctcgtctgcggcgatgtggggtacggcaagaccgaagtggccatg
cgcggcgccttcaaggcggtgatggacggcaagcaggtggcgcttctggtcccgacgacg
attcttgcccagcagcacatggagacctttgccgagcgtttcaaggcgtatccggtcaag
gtggagatgctctcccgtttccgctcggccaaggaacagaaggcgatcctcgaaggggta
aaaaagggggaggtcgacatcatcatcggcacccatcgcctgttgcagaaggatgtggtc
ttcaaggacctgggccttctcatcatcgacgaagagcagcgcttcggcgtgtcgcacaag
gaacggctgaagcaattccgggctgtggtggacatcatgacgctcaccgccaccccgatc
ccgcgtaccctgtacatgtcgctgatggggatccgcgacctctccatcatcgataccccg
ccggtcgatcgtctcgctatcaagaccttcgtggcgcgctcttccgatgagctgatccgc
gaggcagtgctgcgggagttgcgccggggcgggcaggtgttcttcgtccataaccgggtg
cagaccatcggtgccatggcggagcatttgcagcagatcgtccccgaggcgcgcattgcc
gtggggcacggccagatggacgaaaaggagctggaacgggtgatgctcggctttatgcat
ggcgaaaccaacttgctcctctgcaccaccatcatcgagtcggggctcgacatcccgact
gccaacactctgatcgtcagccgggccgatactttcggtctgtcccagctctaccagttg
cgcggccgggtgggacgctccaagcagcgcgcctacgcctatctgctcatcccaggcgaa
ggggccatctcggccgatgcgcgggagaggctcaagatcatccaggagcttaccgaactg
ggcgccggctttcgcatcgccacccacgacctggagatccggggcgccggtgatcttctc
ggggcgcggcagtccggggatatcgccgcggtaggttttgaactctatacggaacttctt
gaagaggcgatcaggcagctgaagggcgaggaactggccgagcgggtcgagccggagatc
aagctgcgcatcccggcgtttgtcccggaggattatgtccgcgaaccgaaccagcggctc
attatctacaaaaagctttcccaggcgacatcggaggaagatatcggggaaatcatggcg
gagctggtcgaccgcttcggcaagttgccgctggcggctacctatctcctggaagtgatg
cggctgcgcgtcaccctgaaagccatgctggtcaaggagatcgagttcgatggtaaacgg
cttgtcctctctttccatcagaagacccccgttccacccgataccatcatcgccctgatc
cggcaacagccgaaaaaataccagttcacgcccgacttccgcctctatgccgagctggct
gatacctcgtttgacggcattctcggcgaggccagaaatctcttgaaaaggctaggctga
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