KEGG   Gardnerella vaginalis 409-05: HMPREF0424_0764
Entry
HMPREF0424_0764   CDS       T01146                                 
Symbol
casE
Name
(GenBank) CRISPR system CASCADE complex protein CasE
  KO
K19126  CRISPR system Cascade subunit CasE
Organism
gva  Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:gva00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:gva02048]
    HMPREF0424_0764 (casE)
Prokaryotic defense system [BR:gva02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Subtype I-E factors
    HMPREF0424_0764 (casE)
SSDB
Motif
Pfam: CRISPR_assoc
Other DBs
NCBI-ProteinID: ADB14325
LinkDB
Position
867351..867998
AA seq 215 aa
MSYLSRVEIDYKKPSSLRDLKSVGAFHNWVEQSFPDEWENHERSRKLWRVDVLHGKHYLL
IVSDSKPDLQRLEMYGVSGTASSKTYDKFLGSLMNGMRMQFRVTLNPVVSISDNAETHTA
RGRVVPHVTYDQQMNFLLNRAQKLGFSLNENEFAIVERGYSLFTKSEKPIRLSKAVYQGI
LTISDADIMRKTLLEGIGKKKAYGFGMMTVIPLDN
NT seq 648 nt   +upstreamnt  +downstreamnt
atgtcttatttaagcagagtagaaattgattataaaaagccttcatcgttgagagatctt
aaatctgttggtgcttttcataattgggttgagcaaagttttcctgacgaatgggagaat
catgaaagaagcagaaagctatggagagttgatgttttgcatggaaaacattacttgctt
atagtgagtgattctaaaccagatttgcaacgtctagagatgtatggtgtttccggaaca
gcgtcaagtaaaacttatgataagtttttaggctcactgatgaatggcatgagaatgcaa
tttcgtgtgacacttaaccctgttgtttctatttctgataatgctgaaactcacactgct
agaggtagggtagtaccacatgttacttatgatcagcagatgaattttttgcttaatcgc
gcgcaaaaattaggtttttcgttgaacgaaaatgaattcgccattgttgaacgcggatat
agcttatttactaagtcagaaaaacctattcgattaagtaaagctgtttatcaaggtatt
ttaacaattagtgatgcagacatcatgcgtaaaacactgctagaaggaattggtaaaaag
aaagcatatggctttggaatgatgacagtaattcctttagacaattaa

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