Galeopterus variegatus (Sunda flying lemur): 103604822
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Entry
103604822 CDS
T08727
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
gvr
Galeopterus variegatus (Sunda flying lemur)
Pathway
gvr03030
DNA replication
gvr03410
Base excision repair
gvr03420
Nucleotide excision repair
gvr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103604822 (LIG1)
03410 Base excision repair
103604822 (LIG1)
03420 Nucleotide excision repair
103604822 (LIG1)
03430 Mismatch repair
103604822 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvr03032
]
103604822 (LIG1)
03400 DNA repair and recombination proteins [BR:
gvr03400
]
103604822 (LIG1)
Enzymes [BR:
gvr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103604822 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
103604822 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
103604822 (LIG1)
DNA replication proteins [BR:
gvr03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
103604822 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
103604822 (LIG1)
DNA repair and recombination proteins [BR:
gvr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
103604822 (LIG1)
NER (nucleotide excision repair)
Other NER factors
103604822 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
103604822 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
103604822
NCBI-ProteinID:
XP_008587625
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MQRSIMSFFHPKKEGKARKPEKETSNSSRETEPLPKVALKEQNGVVPESDSPVKRPGRKA
SRVLSSEGEEEDEALTPTKGQIPAPDCPKVSPSSPTTSPENSPSLSDTSAMDVSPSGIPK
RRTARKQLPKRTIQDVLEEQNEDEDREAKRKKEEEEAETPRESPTETEVAKKKEAEEGDQ
PPVPPKISKAETQTESISEPEVAVKQEPQEDDQTKPLHRTPKMLSSFFAPRKPAIKKEVK
EEGSGALRKEEIKGPLDPTNYNPAKNNYHPVEDACWKLGQKVPYLAVARTFEKIEEVSAR
LQMVETLSNLLRSVVALSPLDLLPVLYLSLNRLGPPQRGLEFGVGDGVLLKAVAQATGRQ
LESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTTCGVFAKFCDIAGLTGSASMTKKMD
IIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGK
GKTAEARKTWLEEQSMILKQTFCEVPDLDRIVPVLLEHGLERLPDHCRLSPGVPLKPMLA
HPTRGVSEILKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTERYPDIISRI
PKIKLPSVTSFILDTEAVAWDQEKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYL
NGQSLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVK
TLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDK
DSEELQAICKLGTGFSDGELEEHHQRLQALVLPTPRSYVRADGAVAPDHWLDPSTVWEVK
CADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVAYLYRKQSQIQN
QQGTGLDSDLEDFY
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggtaaagcaaggaaacct
gagaaggagacatccaacagcagcagagagacggagccccttccaaaggtggcactgaaa
gagcagaatggagtggtgcccgagagtgactctccagtgaagagaccagggaggaaggcg
tcccgggtcctaagcagtgaaggggaggaggaggatgaagccctcactcccaccaaaggc
cagatacctgccccagactgtcccaaagtgtcaccttccagtcctaccacatctcctgaa
aacagcccttccctctcagatacctctgccatggacgtctccccatcagggatcccaaag
cgtcgcacagctcggaagcagctcccgaaacggacaattcaggatgtcctggaagagcag
aatgaggatgaggacagagaagccaagaggaagaaagaggaggaagaagcagagacccca
agagaaagccccacagagactgaagtggcaaaaaagaaggaagcagaagaaggagaccag
cctccagtgccccccaagatatccaaagcagagacccaaacagaaagcatttcagagcct
gaggtggccgtgaagcaggaaccacaggaagacgaccagactaagcctctacacagaact
cccaagatgcttagcagtttcttcgccccccggaagccggcaatcaaaaaggaagtgaaa
gaagaggggtcaggtgctctaagaaaggaggagatcaaaggacccctggacccaaccaac
tacaatcctgccaagaacaactaccatcctgttgaagatgcctgctggaaacttggccaa
aaggtcccttatttggctgtggcccgtacatttgagaagatcgaagaggtttctgctcgg
ctccagatggtggagacactgagcaacttgctgcgctctgtggtggccctatcccctcta
gacctcctccctgtcctctacctcagcctcaaccgccttgggccaccccagcggggcctg
gagtttggcgttggtgatggtgtcctgctaaaggcagtggcccaggccacaggtcggcag
ctagagtcggtccgagctgaggcagccgagaagggcgacgtggggctggtggccgagaac
agtcgcagcactcagagactcatgttgccaccaccacccctcaccacctgtggggtcttc
gccaaattctgcgacatcgctgggctcacaggcagtgcttccatgaccaagaagatggac
atcatcaaaggcctctttgtggcctgtcgtcactcagaagcccgcttcattgccagatcc
ctaagtggacgactgcgcctcgggctggcagaacagtcggtactggccgcccttgcccag
gccgtgagcctcacgccaccaggccaagaattccccccagccgtggtggatgctgggaag
ggcaagacggcagaggccagaaagacgtggctggaggaacagagcatgatcttgaaacag
acgttctgtgaggtgcctgacctggaccgaattgtccctgtgctgctggagcatggcctg
gaacgtctcccagatcactgcaggctgagcccaggggtccccctgaaaccaatgttggct
catcccactcggggtgtcagcgagatcctgaaacgctttgaggaggcagctttcacctgc
gagtacaaatacgatgggcagagggcacagatccatgtactggaaggcggggaggtaaag
atcttcagcaggaatcaggaagacaacaccgaaaggtaccctgacatcatcagccgcatc
cccaagattaaactcccttcagtcacatccttcatcctggacaccgaagccgtggcttgg
gaccaggaaaagaagcagattcagccattccaagtgcttaccacccgcaaacgcaaggag
gtggacgcatcagagatccaggtgcaggtgtgtttatatgccttcgacctcatctaccta
aatggacagtccctggtacgtgagcctctttcccggcgcagacagctgctccgggagaac
tttgtggaaacagagggtgagtttgtcttcgccacctctctggacaccaaggacactgac
cagattgccgagttcttggagcaatctgtaaaagattcctgcgaggggctgatggtgaag
accctggatgtcgatgccacctacgagattgccaagagatctcacaactggctcaagctg
aagaaggactacctcgatggcgtcggcgacaccctagaccttgtggtgatcggtgcctat
ctgggccgggggaagcgggccggccggtacgggggtttcctgctggcctcctacgacaag
gacagtgaggagctgcaagccatatgcaagcttggaactggcttcagcgatggtgagctg
gaagaacatcaccagagactgcaggccctggtgctccccaccccacgctcctatgtgcgg
gcagatggtgctgtggcccccgaccactggctggaccccagcactgtgtgggaggtgaag
tgtgctgatctttctctctcccccatctaccctgctgcccggggcttggtggatagtgaa
aaggggatctcccttcgtttccctcggtttattcgcgtccgggaagacaagaagccagag
gaggccaccaccagtgcccaggtggcctatctgtaccggaagcaaagtcagattcagaac
caacaaggcacaggtttagactctgaccttgaagatttctactaa
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