Komagataeibacter xylinus: H845_1666
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Entry
H845_1666 CDS
T03044
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gxl
Komagataeibacter xylinus
Pathway
gxl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gxl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H845_1666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gxl03400
]
H845_1666
Enzymes [BR:
gxl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H845_1666
DNA repair and recombination proteins [BR:
gxl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H845_1666
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_16
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHI25609
LinkDB
All DBs
Position
1808016..1811498
Genome browser
AA seq
1160 aa
AA seq
DB search
MNDTAGFSLAPGAPLPVWGVPDGYDAFLLARRAGEQGGPVLHVCRDDAAMARIADLLAFV
TPGAEILRFPGWDCLPYDRVSPNPAIVAERVATLTRLLEKATTPRIVLTTVMGVVQRVPP
RAAFAGQSITIKVGESLDAPLLTELLIAHGYNRTDTVMDQGEFATRGGIFDIFPAGDSEP
VRLDLFGDEVENIRRFDPGTQLSTARIDSLTMRPVADFSLDPASISRFRTGWRDLFGPAA
ASDPLYQHISEGRRHAGMEHWLPLFHEQMETLVDYLPGVSISLANQAEEVLATRLEMIAD
HYDARRQPTREGEVPYRPLPPHLMYLDRKGWDAMIAGRKAVVFMPFAQPDGAPGMDAGGR
PGQMFAKTVTEGRENVFPMLHAKVEEWSQTGRRAYVTAWSRGSCERIGVLLREYRLPVQT
CATWKEAQKLKPGTVGLLTLGLDRGFVADNVAFVSEQDLLGERISRPPRRRKKADQFISE
ASEIAEGDLIVHQDYGIGRYDGLETIGVGTAPHDCLRLIYDGNEKLFLPVENIELLSRFG
SDQAHVALDKLGGVSWQSRKAKMKQRIRDMAGELIRTAAARALREAPALTPEDGMWDEFC
ARFPFVETEDQSRAIADVLDDMVSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGAQVAV
VVPTTLLARQHYRTFSARFAGLPVNVAQLSRMVTPREATAVRKGLADGTVNIVIGTHALL
AKTVKFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMS
LIATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQVFCVVPRIEDLDRMAARLHEIVP
DARLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLG
QLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAQKRLEVMQTLDTLGAGFTLASHDLDLRG
AGNLLGDEQSGHIREVGIELYQQMLEDAVADLRTEKGRRKLQDRDWTPNIILGLPVLIPD
TYVTDLPVRLGLYRRIAALANDAEVEAMEAELVDRFGTLPDEVRNLLDVVTLKRLCREAG
VERLEAGPKGMVIQFRGNTFANPAGLVAWIARQKEANVRLRPDHKLAIIREMTNAQRITQ
ARKVLTALVRLAREDADVPA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatacggcaggtttctcgctcgcacccggcgcaccgcttcccgtatggggcgtg
ccggatgggtatgacgccttcctgctggcgcgcagggcgggcgaacagggcgggccagtg
ctgcatgtctgccgcgatgacgccgccatggcgcgcatcgcggacctgctggcctttgtc
acgccgggggcggaaatcctgcgtttcccgggctgggactgcctgccgtatgaccgtgtc
tcccccaatcccgccatcgtggcggaacgggtggcgacactgacccgcctgctggaaaag
gccactaccccccgcatcgtactgaccacggtgatgggcgtggtgcagcgcgtaccgcca
cgcgcggcctttgccgggcagtcgatcaccatcaaggtgggtgagagccttgatgcgccg
ttgctcacggaactgctgatcgcacatggctacaaccgcaccgacacggtgatggaccag
ggcgagttcgcgacccgtggcggcattttcgatattttccccgcaggcgacagcgagccg
gtacgcctcgacctgttcggcgacgaggtggagaacatccgccgcttcgaccccggcacc
cagctctcgactgccaggatcgacagcctgaccatgcggccggtggcggatttcagcctt
gatcccgcctccatatcccgtttccgcaccggctggcgcgacctgttcggccctgccgcc
gccagtgatccgctgtaccagcacatatccgaaggcaggcggcatgcgggcatggagcac
tggctgcccctgttccatgaacagatggaaacgctggtggactacctgcccggcgtgtcc
atatcgctggccaaccaggcggaggaagtgctggccacccggctggaaatgatcgccgac
cattacgacgcccgcaggcagccgacgcgcgaaggcgaggtaccctaccgcccgttgccg
ccacacctcatgtatctcgaccgcaaggggtgggatgcgatgatcgcgggccgcaaggcc
gtggtgttcatgccctttgcccagcctgacggcgcgccgggcatggatgcgggcggccgg
ccgggccagatgttcgccaagaccgtgaccgagggacgtgaaaacgtcttccccatgctg
catgcgaaggtggaggaatggtcccagaccggccgccgcgcctacgtcacggcatggagc
cggggatcatgcgaacgcattggcgtgctgctgcgtgaataccgcctgccggtgcagacc
tgcgccacgtggaaagaggcccagaagctgaagcccggcaccgtcggcctgctgacgctg
gggctggatcgtggctttgtagccgataacgtggccttcgtgtccgaacaggacctgctg
ggtgagcggatttcccgcccgccgcgccgccgcaagaaggcggaccagttcatatccgag
gcatcggaaattgccgaaggcgacctgatcgtccatcaggattacggcattggccgttat
gacgggctggagacgatcggcgtgggcacggcgccgcatgactgcctgcgcctgatctat
gacggcaatgaaaagctgttcctgccggttgaaaacatcgaactgctcagccgcttcggc
tcggatcaggcccacgtggcgctggacaagctgggtggggtgtcgtggcagtcgcgcaag
gcgaagatgaagcagcgcatccgcgacatggcgggtgaactgatccgcacggcggccgcg
cgcgccctgcgtgaagcacccgcgcttacgccagaggacgggatgtgggatgaattctgc
gcccgcttcccctttgtcgagaccgaggaccagtcccgcgccattgccgacgtgctggat
gacatggtatcgggcaggccgatggaccggctggtctgtggcgacgtgggctttggcaag
accgaggtcgccctgcgtgccgccttcgtcgccgccatgtccggcgcgcaggtggcggtg
gtggtgccgaccacgctgctggcgcgccagcattaccgcacgttctccgcccgctttgcc
gggctgccggtcaatgtggcgcagctttcgcgcatggtcacgcccagggaagcgaccgcc
gtgcgcaaggggctggccgatggcacggtcaatatcgtgatcggcacgcatgccctgctg
gccaagaccgtcaaattcgctgacctcggcctgctgatcgtcgatgaggaacagcatttc
ggcgtggcccacaaggaaaagctgaaggccctgcgcgaagacgtgcacgtgctgacgctg
tcggccaccccgctgccacgcacgctgcaacttgccctgaccggcgtgcgcgaaatgagc
ctgatcgccaccccgcccaccgaccggctggcggtgcgcaccttcatcatgccgttcgac
agcgtggtgatccgcgaggcgatccagcgcgagcgcttccgtggcgggcaggtgttctgc
gtcgtgccacgcatcgaggacctcgaccgcatggccgcgcgcctgcatgaaatcgtgccc
gatgcccggctggtgcaggcccatggccgcctgacaccgaccgagttggaacgggtgatg
accgagttcagcgacggcaaatatgacatcctgctgtccaccaacatcgtggaaagcggg
ctggacatgcccgcggtcaacacgctcatcatccaccgcgccgacatgttcgggctgggc
cagttgtaccagctgcgcgggcgcgtggggcgcggcaagcagcgtggctatgcctacctt
acatggccgcagacgcatgtgctgtcggcggcggcgcagaagcggctggaagtcatgcag
acgctggatacgctgggcgcgggcttcacgctggcgtcccacgatctggacctgcgtggc
gctggcaacctgctgggggatgagcagtcgggccatatccgtgaagtgggcatcgagctg
taccagcagatgctggaagacgccgtggccgacctgcgcacggaaaagggacggcgcaag
ctgcaggatcgcgactggacgcccaacatcatccttggcctgccggtgctgatccctgac
acctatgtcaccgatttgccggtgcgtctgggcctgtaccgccgcatcgcggcgctggcc
aatgatgcggaggtcgaggccatggaggccgaactggtggaccgcttcggcacgctgccc
gacgaagtgcgcaacctgctggatgtcgtgaccctgaaacgcctgtgccgcgaggccggg
gtggaacggctggaagccggccccaagggcatggtcatccagttccgtggcaacacgttc
gccaacccggctgggctggtggcgtggattgcaaggcagaaggaagccaatgtccgcctg
cgccccgaccacaagcttgcgatcatacgcgaaatgaccaatgcccagcggatcacgcag
gcgcgcaaggtgctgacggccctggtcaggctggcgcgggaggatgctgacgttccggcc
tga
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