Komagataeibacter medellinensis: GLX_05530
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Entry
GLX_05530 CDS
T01631
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gxy
Komagataeibacter medellinensis
Pathway
gxy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GLX_05530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gxy03400
]
GLX_05530
Enzymes [BR:
gxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GLX_05530
DNA repair and recombination proteins [BR:
gxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GLX_05530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAK82965
UniProt:
G2I4B8
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All DBs
Position
644286..647768
Genome browser
AA seq
1160 aa
AA seq
DB search
MNTTAGFSLAPDAPLPVWGVPDGYDAFLIARRLREGPGPVLHVCRDDAGLARIAEQLAFV
APDAEILRFPGWDCLPYDRVSPNPAIVAERVATLTRLLEKATAPRIVLTTVMGLIQRVAP
RAAFAGQSITIRTGESLDAPFLMELLIAHGYNRTDTVMEQGEFATRGGIFDIFPAGDSEP
VRLDLFGDEVENIRRFDPGTQRSTAKIDSLTMRPVADFSLDPASISRFRTSWRDLFGPAA
ASDPLYQHISDGRRHAGMEHWLPLFHEQMETLVDYLPGVSISLANQAEEVLVTRLEMIAD
HYDARRQPTREGEVPYRPLPPHLMYLDRKGWDAIIAGRKAVVFMPFAQPDGAPGMDAGGR
PGQMFAKTVTEGRENVFPMLHARVEEWSQTGRRAYVTAWSRGSCERIGVLLREYRLPVQT
YTTWKEAQKLRPGTVGLLTLGLDRGFVADNVAFVSEQDLLGERISRPPRRRKKADQFISE
ASEIAEGDLIVHQDYGIGRYDGLETIGVGTAPHDCLRLIYDGNEKLFLPVENIELLSRFG
SDQAHVALDKLGGVSWQSRKAKMKQRIRDMAGELIRTAAARALREAPAITPEDGMWDEFC
ARFPFVETEDQSRAIADVLDDMASGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGAQVAV
VVPTTLLARQHYRTFSARFNGLPVNVAQLSRMVTPKEATAVRKGLTDGTVNIVIGTHALL
AKTVKFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMS
LIATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQVFCVVPRIEDLDRMATRLHEIVP
DARLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLG
QLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAQKRLEVMQTLDTLGAGFTLASHDLDLRG
AGNLLGDEQSGHIREVGIELYQQMLEDAVADLRTEKGRRRLLDRDWTPNIILGLPVLIPD
TYVTDLPVRLGLYRRIAALANDAEVEAMEAELVDRFGTLPDEVRNLLDVVTLKRMCREAG
VERLEAGPKGMVIQFRGNTFANPAGLVAWIAKQKEANVRLRPDHKLAIIREMTNAQRIAQ
ARKVLAALVHMVQADAGVSA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgacggcaggcttttcgctggcacccgatgcacctctgcccgtatggggcgtg
ccggacgggtatgacgctttcctgatcgcacgcaggctgcgcgaggggcctggcccggtg
ctgcatgtctgtcgtgatgatgcgggcctggcccgtattgccgagcagttggcctttgtg
gcgccggatgccgaaatcctgcgttttcccggctgggactgcctgccgtatgaccgtgtc
tcccccaatcccgccattgtggcggaacgggtggccaccctgacccgccttctggaaaag
gcgactgccccccgcatcgtgctgaccacggtaatggggctgatccagcgtgtggccccg
cgcgccgcctttgccgggcagtcgatcaccatcagaacaggcgaaagcctggatgcgcca
ttcctgatggaactgctgatcgcgcatggatacaaccgcaccgacacggtgatggaacag
ggggagtttgccacccgcggcggcatttttgatattttccccgcaggcgacagtgaaccg
gtgcgtcttgacctgtttggggacgaggtggaaaacatccgccgcttcgaccccggaacc
cagcgctcgaccgcgaagatcgacagcctgaccatgcggccggtagcggatttcagcctc
gatcccgccagtatctcgcgtttccgcaccagctggcgcgacctgttcgggcctgccgcc
gccagtgacccgctttaccagcatatatccgatggccgacgccatgcggggatggaacac
tggttgccgctgttccatgaacagatggaaacgctggtggactacctgcccggtgtgtcc
atatcactggccaaccaggcggaagaggtgctggtcacccgcctggaaatgattgccgac
cattatgatgcccgcaggcagcccacgcgcgaaggcgaggtgccctaccgcccgctgccg
cctcacctcatgtatctcgaccgcaaggggtgggatgcgataattgcgggccgcaaggcc
gtagtgttcatgccctttgcccagcctgacggcgcaccgggcatggatgcgggcggcagg
cccggacagatgtttgccaagaccgtgaccgagggacgtgaaaacgtcttccccatgctg
catgcacgggtggaagaatggtcgcagaccggcaggcgcgcctatgtcacggcgtggagc
aggggttcatgcgaacgcattggcgtgctgctgcgtgaataccgcctgccggtgcagacc
tataccacgtggaaagaagcgcagaagctcaggcccggcaccgtcggcctgctgacgctg
gggctggaccgtggcttcgttgcggacaatgtggcgtttgtgtccgaacaggacctgctg
ggtgagcggatttcccgcccgccgcgccgccgcaagaaggctgaccagttcatatccgaa
gcatcggaaattgccgaaggcgacctgatcgtgcatcaggattacggcatcggccgctat
gacgggctggagacgattggtgtgggcacagcgccccatgactgtctgcgcctgatctat
gacggcaatgagaagctgttcctgccggtggagaacatcgaactgctcagccgctttggc
tccgatcaggcccatgtggcgctggacaagctgggcggcgtgtcatggcagtcgcgcaag
gcgaagatgaagcagcgcatccgcgacatggcgggtgaactgatccgcacggccgcagcc
cgcgccctgcgcgaagccccggccattacaccagaagacgggatgtgggacgaattctgc
gcccgcttcccctttgtcgagaccgaggatcaatcccgcgccattgccgacgtgctggat
gacatggcatcgggcaggccgatggaccggctggtctgtggcgatgtgggctttggcaag
accgaagtcgcgctgcgagccgccttcgtcgccgccatgtcgggtgcacaggtggcggtg
gtggtgccaaccacgctgctggcccgacagcattaccgcacgttctccgcccgctttaac
gggctgccggtcaatgtggcacagctttcgcgcatggtcacgcccaaggaagcgaccgcc
gtgcgcaaggggctgaccgatggcacggtcaatatcgtgatcggcacacatgcgctgctg
gccaaaacggtcaaattcgccgatctcggcctgctgatcgtcgatgaggagcagcatttt
ggcgtggcccacaaggaaaagctcaaggcgctgcgtgaggacgtgcatgtgctcaccctt
tccgccaccccgctgccacgcacgttgcaactggcgctgaccggtgtacgggaaatgagc
ctgatcgccacgccgcctaccgaccggctggcggtacgcaccttcatcatgccattcgac
agcgtggtgatccgcgaggcgatccagcgcgaacgctttcgtggcgggcaggtgttctgt
gtcgtgccgcgtatcgaagatctggaccgcatggccacgcgcctgcatgaaatcgtgcct
gatgcccgactggtacaggcccatggtcgcctgacgccaaccgagctggaacgggtaatg
accgagttcagtgacggcaaatatgacatcctgctgtccaccaacatcgtggaaagcggg
ctggacatgcctgcggtcaatactctcatcatccaccgcgccgacatgttcgggctggga
cagctgtaccagctgcgtgggcgcgtgggccgtggcaagcaacgcggctatgcctacctt
acgtggccgcagacacatgtgctctcggctgcggcgcagaagcggctggaagtcatgcag
acactggatacgctgggcgcgggcttcacgctggcttctcacgaccttgacctgcgtggt
gcgggcaacctgctgggcgatgagcagtcgggccatatccgtgaagtaggcatcgaactg
taccagcagatgctggaagatgcggtggccgacctgcgcacggaaaaagggcggcgcagg
ctgttggaccgtgactggacgcccaacatcatccttgggctgccggtactgatcccggac
acctatgtcaccgacctgcccgtgcgccttggcctgtaccgccgcattgcggcactggcc
aacgatgcggaggtcgaggcaatggaggccgaactggtggaccgcttcggcacgctaccg
gacgaagtacgcaacctgctggatgtcgtcaccctcaagcgtatgtgccgtgaagcaggc
gtggaacggcttgaagcaggtcccaagggtatggtcatccagttccgtggcaacacgttt
gccaacccagcgggactggtggcgtggattgcaaagcagaaggaagccaatgtccgcctg
cgtcccgaccacaagcttgcaatcatacgtgaaatgaccaatgcccagcggatcgcgcag
gcccgcaaggtgcttgccgcactggttcatatggtgcaggcagacgcaggcgtatcagcc
tga
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