Georgenia yuyongxinii: FE374_04160
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Entry
FE374_04160 CDS
T07730
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gyu
Georgenia yuyongxinii
Pathway
gyu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gyu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FE374_04160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gyu03400
]
FE374_04160 (mfd)
Enzymes [BR:
gyu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FE374_04160 (mfd)
DNA repair and recombination proteins [BR:
gyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FE374_04160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDC23935
UniProt:
A0A5B8C3S4
LinkDB
All DBs
Position
925694..929308
Genome browser
AA seq
1204 aa
AA seq
DB search
MKLTGLLPLLRTDPAVANATALAREAVLAPEVTITAPMGVRAPLLAELSAGERGRPVVLI
TATGREADEAATALRDYLPDDDVAVFPAWETLPHERLSPRSDTVAKRLAVLRRLAHPTAD
GGQSGEIQVLVMPVRALLQPVVQGLGEFEPVALEVGQEVDLEQVAADLAAAAYTRVDMVE
RRGEFAVRGGLLDVFPPTENHPMRIEFWGDTVEEIRWFAVADQRSLELADHGLWAPPCRE
LLLTEQVRSRALTLVEDLPGAADMLEKMGQGIAVEGMESLAPALVDGMQPVLDLVPDHTL
VVLADPEKVRRRAHDLVATTEEFLAAAWASAAQGGKTPLDLRAASFAALAEARALALTRS
LGWWSVGSLPTDAELAQFEQESDGGASADRRLTLAARDVERYNGDVERALKDLAALVHEG
WRLVLTTEGPGPGRRMAEQLTAADVPARVVEDITQDLPSSVVLVTTASSGRSFVAPDLKL
AVITEADITGRAGTSTRDMRRMPSRRRNVVDPLALRPGDYVVHEQHGVGRFVELVQRTVG
TGTDATTREYLVIEYASSKRGQPGDRLFVPTDSLDQVTKYTGGEAPTLSKMGGSDWSKTK
ASAKKAVKKIAAELIRLYAARMASKGHAFGPDTPWQRELEDAFPHQETPDQVITIDEVKA
DMEKPTPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHLDTFSERYA
GFPVTVKALSRFQSDAEATAVRDGVSKGTVDVVIGTHRLLTGEVRFKDLGLVIVDEEQRF
GVEHKETLKQLRTNVDVLAMSATPIPRTLEMAITGIREMSTLATPPEERHPVLTFVGAYE
EKQAAAAIRRELLREGQVFFVHNRVSSINKAAARILELVPEARVAVAHGKMGEHQLEKVI
QDFWDKEFDVLVCTTIVETGLDISNANTLIVDRADQLGLSQLHQLRGRVGRGRERAYSYF
FYPPEKPLTETAHDRLATIAAHTDLGSGIQVAMKDLQIRGAGNLLGGEQSGHIAGVGFDL
YVRMVSDAVAEFRGETEVEKADVKIELPVDAHVPHDYIAHERLRLEAYAKIAGAGDEPSI
AAIREELTDRYGPVPEPVERLFAVAALREKARGVGLSDITAQGKYVRLAPVELPESAQLR
LKRLYPGTVLKPAVRTILVPYPMTAKLGGKPLRDVALMDWVVQLLDAVLKDSVAAAAKVG
AGVG
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaccggactgctgcccctgctgcgtaccgacccggccgtcgccaacgccacc
gccctggcgcgcgaggcggtcctcgcgcccgaggtcaccatcaccgcccccatgggtgtc
cgcgccccgctgctcgccgagctctccgcgggggagcgtggccgcccggtcgtcctcatc
acggccaccggccgcgaggccgacgaggccgccaccgcgctgcgcgactacctgcccgac
gatgacgtcgccgtcttcccggcgtgggagaccctgccgcacgagcggctgtccccgcgc
agcgacacggtcgccaagcgcctcgcggtgctgcgccgcctcgcccatcccactgccgac
ggcgggcagtccggtgagatccaggtgctcgtcatgccggtgcgcgccctgctgcagccg
gtggttcagggcctgggcgagttcgagccggtcgccctggaggtgggccaggaggtcgac
ctcgagcaggtcgccgccgacctcgccgccgcggcctacacccgcgtggacatggtcgag
cggcggggcgagttcgcggtgcgcggcggcctcctcgacgtcttcccgcctaccgagaac
caccccatgcgcatcgagttctggggcgacaccgtcgaggagatccgctggttcgccgtc
gcggaccagcgctccctcgagctggccgaccacgggctgtgggcgccgccgtgccgtgag
ctgctgctgaccgagcaggtccgctcccgcgcgctgaccctggtcgaggacctgcccggc
gccgcggacatgctcgagaagatgggccagggcatcgccgtggagggcatggagtccttg
gccccggcgctggtggacggcatgcagccggtcctcgacctcgtcccggaccacaccctg
gtggtccttgccgaccccgagaaggtccgccgccgcgcccacgacctggtcgccaccacc
gaggagttcctcgcggccgcctgggcctccgccgcccagggcggcaagaccccgctcgac
ctgcgcgccgcgtccttcgccgccctcgccgaggcccgcgccctggccctgacccgctcg
ctgggctggtggtcggtcggctccctgcccaccgacgccgagctggcccagttcgagcag
gagtccgacggcggagcctccgccgaccgtcgcctcaccctcgccgcccgcgacgtcgag
cggtacaacggcgacgtcgagcgcgccctgaaggacctcgcggccctcgtccatgagggc
tggcgcctcgtgctgaccaccgagggtcccggtccgggccgccgtatggccgagcagctc
accgccgcggacgtgcccgcccgggtggtcgaggacatcacccaggatctgccgtcgtcc
gtggtgctggtgaccacggcgagcagcggccgcagcttcgtcgcacccgacctcaagctc
gccgtgatcaccgaggccgacatcaccggccgcgccggcacctccacccgggacatgcgg
cgcatgccctcccggcgccgcaacgtcgtcgacccgctcgcgctgcgccccggggactac
gtggtccacgagcagcacggcgtcggccgcttcgtcgagctggtccagcgcaccgtggga
acgggcacggacgccaccacccgggagtacctggttatcgaatacgcgtcgtccaagcga
ggccagcccggcgaccggctcttcgtccccaccgactccctggaccaggtcaccaagtac
accggcggcgaggcacccacgctgagcaagatgggcggctcggactggtccaagaccaag
gcgagcgccaagaaggcggtcaagaagatcgccgcggagctcatccgcctctacgccgcc
cggatggcctccaagggccacgccttcggtcccgacaccccctggcagcgcgagctggag
gacgccttcccgcaccaggagacccccgaccaggtcatcaccatcgacgaggtcaaggcc
gacatggagaagccgaccccgatggaccgcctcatcagcggcgacgtcggctacggcaag
actgagatcgcggtgcgggccgcgttcaaggcggtccaggacggcaagcaggtggccgtc
ctcgtgcccaccacgctgctggtccagcagcacctggacaccttctccgagcggtacgcc
ggcttccccgtcaccgtcaaggccctgtcccggttccagtccgacgccgaggcgacggcc
gtgcgcgacggcgtcagcaagggcacggtcgacgtggtcatcggcacccaccgcctgctc
accggggaggtccggttcaaggacctcggcctggtgatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagacgctcaagcagctgcgcaccaacgtcgacgtgctcgcgatg
tccgccacccccatcccgcgcaccctggagatggccatcaccggcatccgggagatgtcc
accctggccaccccgccggaggagcgccaccccgtgctcacgttcgtcggcgcctacgag
gagaagcaggcggccgccgccatccggcgcgagctgctgcgcgagggccaggtgttcttc
gtgcacaaccgggtcagctcgatcaacaaggccgccgcccggatcctggagctggtgccg
gaggcgcgggtcgccgtcgcgcacgggaagatgggcgagcaccagctggagaaagtgatc
caggacttctgggacaaggagttcgacgtgctggtctgcaccacgatcgtggagaccggc
ctggacatctccaacgccaacaccctcatcgtcgaccgcgccgaccagctcgggctgtcc
cagctgcatcagctgcgcgggcgcgtgggccgcggccgggaacgcgcctactcctacttc
ttctacccgccggagaagccgctgaccgagaccgcgcacgaccgcctcgccaccatcgcc
gcgcacaccgacctcggctccggcatccaggtggcgatgaaggacctgcagatccggggc
gccggcaacctcctcggcggggagcagtccggccacatcgcgggggtcggcttcgacctg
tacgtgcggatggtctccgacgccgtcgcggagttccgcggcgagacggaggtggagaag
gccgacgtgaagatcgagctaccggtcgacgcccacgtgccgcacgactacatcgcccac
gaacggctccggctggaggcctacgcaaagatcgcgggcgccggggacgagccctccatc
gccgccatccgcgaggagctgaccgaccggtacgggccggtgcccgagccggtcgagcgg
ctcttcgccgtggccgcgttgcgcgagaaggcccgcggggtggggctgagcgacatcacc
gcccagggcaagtacgtgcgcctcgctcctgtcgagctgcccgagtccgctcagctgcgg
ctcaagcggctgtatccgggcacggtgctgaagccggcggtgcgcacgatcctcgtcccg
tacccgatgacggcgaagctcggcggcaagccgttgcgcgacgtcgcgctcatggactgg
gtggtgcagctgctcgacgccgtcctgaaggactccgtggccgcggcggccaaggtgggc
gccggcgtcgggtaa
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