KEGG   Halobacterium sp. BOL4-2: JRZ79_03380
Entry
JRZ79_03380       CDS       T07284                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
habo  Halobacterium sp. BOL4-2
Pathway
habo03030  DNA replication
habo03410  Base excision repair
habo03420  Nucleotide excision repair
habo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:habo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JRZ79_03380
   03410 Base excision repair
    JRZ79_03380
   03420 Nucleotide excision repair
    JRZ79_03380
   03430 Mismatch repair
    JRZ79_03380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:habo03032]
    JRZ79_03380
   03400 DNA repair and recombination proteins [BR:habo03400]
    JRZ79_03380
Enzymes [BR:habo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     JRZ79_03380
    6.5.1.6  DNA ligase (ATP or NAD+)
     JRZ79_03380
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     JRZ79_03380
DNA replication proteins [BR:habo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    JRZ79_03380
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     JRZ79_03380
DNA repair and recombination proteins [BR:habo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     JRZ79_03380
   NER (nucleotide excision repair)
    Other NER factors
     JRZ79_03380
   MMR (mismatch excision repair)
    Other MMR factors
     JRZ79_03380
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QRY25457
UniProt: A0A895AHF4
LinkDB
Position
645342..647024
AA seq 560 aa
MKFGSFATFAADIEATDADLDVVALVAELFDAADSDLDVVARFVQGRVFPAHSETKLDIG
PQLCYTALSRAAGRNVDADDIEARLAETGDIGAVAGSLALGGQTGLAAFGGGDDHADGLT
VSGVADELAALAAAAGDGSQSEKVTLLFGLFNQCTSREARYLARLVLGEMRIGVGEGAVR
DAIAEAFDVPTAAVERALQVSNDYGLVAETARDSGTDALDAMGLEVGRPVQAMLAQAGTV
TDALDEWREAAVETKFDGARVQVHYDGDDVVLYSRNMENVTGALPELVEFVENNVTAPVI
IDGEAVAADEDGDPLPFQEILKRFRRKHDVAAMREEISVELHAFDCLHAPSADGGEDLLD
APFSDRHRRLRSVVDDASAVSEVLVTDDADEIAAFEAAALEGGHEGIMLKNPAAPYTPGD
RGKDWLKRKPEVETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTD
EELAALSDRLEPHVRSEDGQTVDIEPAVVLEVGYEEIQASPTYSSGYALRFPRFVSVRED
KTPTTADTIERVERLAAQQQ
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgaagttcggctcgttcgccacgttcgctgccgacatcgaagccaccgacgccgacctc
gacgtggtggcgctggtcgcggagctcttcgacgcggccgacagcgacctcgatgtcgtc
gcgcggttcgtccagggacgcgtgttccccgcccactccgagacgaaactcgacatcggg
ccacagctctgttacacggcgctctcgcgggctgcgggccggaacgtcgacgcggacgac
atcgaggcacgactggccgagaccggcgacatcggggccgtcgccggcagcctggccctc
ggcggacagaccggactcgcggcgttcgggggcggcgacgaccacgccgacggtctcact
gtcagcggtgttgcggacgaactcgcggccctggcggccgccgccggcgacggcagtcag
tccgagaaagtcacgctcctgttcgggctgttcaaccagtgtaccagccgggaagcccga
tacctcgcgcggctggtgttgggtgagatgcgcatcggcgtcggcgagggggccgtccgg
gacgccatcgctgaggcgttcgacgtgccgactgcggccgtggagcgcgccctccaggtg
tcgaacgactacggcctcgtggccgaaaccgcacgcgacagcggcaccgacgcgctggac
gcgatggggctggaggtgggccgccccgtgcaggcgatgctcgcgcaggccggcacggtc
acggacgccctcgacgagtggcgcgaggccgccgtcgaaacgaaattcgacggcgcacgc
gtccaggtgcactacgacggggacgacgtggtgctgtactcgcggaacatggagaacgtg
accggggcgctcccggagctcgtggagttcgtcgagaacaacgtcacggcccccgtgatc
atagacggtgaggccgtcgcggccgacgaggacggcgacccactgccgttccaggagatc
ctcaagcggttccgccgcaagcacgacgtggccgcgatgcgcgaggagatcagcgtggaa
ctgcacgcgttcgactgcctgcacgcgccgagcgccgacggcggcgaggacctactggac
gcgccgttttccgaccgccaccggcgactgcgctcggtggtcgacgacgcgtcggcggtc
tcggaggtgctcgtgaccgacgacgccgacgagatcgcggccttcgaggcggccgcgctg
gagggcggccacgagggcatcatgctgaagaacccggccgccccgtacacgcccggcgac
cgcgggaaagactggctgaagcgcaagcccgaggtggagacgctggatctggtcgtgacc
ggcgcggagtggggggaaggccgccgcgcgtcagtgctggggacgttcctgttgtccgcg
cgggacgccgccggcgacggcttcgagaccatcgggaaggtcgccaccgggctgacagac
gaggagcttgcggccctcagcgaccgcctggagccacacgtccgcagcgaggacggccag
acggtcgacatcgagccggcggtggttctcgaagtcggctacgaggagatccaggcgtcg
ccgacgtactcctcggggtacgcgttgcggttcccgcggttcgtctccgtccgcgaggac
aaaaccccgacgacggccgacaccatcgagcgcgtcgagcggctcgccgcccagcaacag
tag

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