Hypericibacter adhaerens: FRZ61_21140
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Entry
FRZ61_21140 CDS
T06413
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hadh
Hypericibacter adhaerens
Pathway
hadh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hadh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRZ61_21140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hadh03400
]
FRZ61_21140 (mfd)
Enzymes [BR:
hadh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRZ61_21140 (mfd)
DNA repair and recombination proteins [BR:
hadh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FRZ61_21140 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
AAA_30
SBP_bac_3
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEX22184
UniProt:
A0A5J6MYG2
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All DBs
Position
2415015..2418497
Genome browser
AA seq
1160 aa
AA seq
DB search
MPISLERAGLVPVGGAPEGFDALIVADLARRARKNGAKAGGELLHVARDDARMARLIEAL
RFAAPDLEVVDFPAWDCLPYDRVSPHRDIVGRRVDSLTRLRAPRAREAPARVVVTTVAAL
LQRLPPRASFEGQTLRLVPGATMEPKALTDFLSGRGYLRSETVNEVGEFAVRGGIIDLFP
PAAAAPLRVDFFGDTIESLRSFDPLTQRSQDKVESFEIKPIGEVQLDPGTIERFRTGYRA
TFGAVAGDDPLYEAISAGRLYAGMEHWLPLFLPSLETLPDYLPDALITLDHQAEEARDAR
LDMIRDFYQARRQLERAEETGGVPYRPLTPDRLYINASEWDDWLASRPSAVFSPFAVPED
AAGWQDAGGKSGRDFADVRASAPATLFAAVVEHLAQARLPRRHVAVAAMSEGSRDRLEHL
LAEHGLERHERVADLEAIRRLPRDRVAFVVLGLEHGFETPDLVVVAEQDILGDRLARPAQ
RRKKTDQFLTELANFSHGDLVVHVEHGVGRYEGIETLEIGGAPHDCLKVIYDGGDKLYVP
VENIDVLSRFGSDDLPVPLDKLGGAGWQARKARVKQRLREIAQQLIRTAAARAVHPGVTL
APPEGLYDEFAARFPYAETEDQQRAIDEVTADLASGRPMDRLVCGDVGFGKTEVALRAAF
VAAAAGYQVAVVTPTTLLCRQHSKTFTERFAGLPIRVAQLSRLVSTKDANQVKADLKAGK
VDIVVGTHSLLAKSVEFANLGLMIVDEEQHFGVAQKERLKELRADVHVLTLTATPIPRTL
QLALSGVREMSLISTPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQSFYVVPRIEDLD
KVAERLRNLVPEIKFVMAHGRMAPTHLEKAMTAFYDRQYDMLLATNIIESGLDIPTANTM
VIHRSDMFGLAQLYQLRGRIGRSKQRGYAYLTLPPGRVLSPTAAKRLQVMQTLDTLGAGF
TLASHDLDIRGAGNLLGDEQSGHIREVGVELYQQMLEDAVKEARGQAKAAQEWTPQISIG
MPVLIPENYVADLGVRLGLYRRIATLVDKAEIDAFGAELIDRFGPLPAEVENLLGIIAIK
QLCRQAGIEKVDAGPKGAVLSFRHNRFAKPAELIAFINRKQDEVSVRPDHKLVWRQDWKD
ANRRVAGVQGLLAHLAKMAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccgatttcgctggagagagcagggctggtcccggtcggcggggcgcccgaggggttc
gacgccctgatcgtcgccgacctggcgcgccgggcccgcaaaaacggcgccaaggccggc
ggcgagctgctgcatgtggcgcgcgacgatgcgcgcatggcgcggctgatcgaggcgctg
cgctttgcggcgcccgatctcgaggtcgtggatttcccggcctgggactgcctgccctat
gaccgggtttcgcctcatcgcgacatcgtcgggcggcgtgtcgacagcctgacccggctg
cgcgccccgcgcgccagggaggcaccggcgcgcgtggtggtcacgaccgtggccgccttg
ctgcagcgattgccgccgcgggcgagcttcgaggggcagacgctgcgcctggtgcccggc
gccacgatggagcccaaggccctgaccgatttcctctcgggccgcggttatctgcgctcg
gagacggtgaacgaggtgggcgagttcgccgtgcgcggcggcatcatcgacctgtttccg
ccggccgcggccgcaccgctgcgcgtcgatttcttcggcgacacgatcgagagcctgcgc
agcttcgatcccctgacccagcgcagccaggacaaggtcgagagcttcgagatcaagccg
atcggcgaggtccagctcgatcccgggacgatcgagcgcttccgcaccggctatcgcgcg
accttcggcgccgtcgccggcgacgatccgctctacgaggcgatcagcgcgggccggctc
tatgccggcatggagcattggctgccgctgttcctgccctcgctcgagacgctgccggac
tatctgccggacgcgctcatcaccctcgatcatcaggccgaggaggcccgcgacgcgcgc
ctcgacatgatccgcgatttctaccaggcgcgccggcagctcgagcgggccgaggagacg
ggcggcgtgccctaccggccgctgacgcccgaccgcctctatatcaacgccagcgagtgg
gacgactggctggcgagccggccttcggcggtcttctcgcccttcgcggtgcctgaggat
gccgccggctggcaggatgcgggcggcaagtccggccgcgatttcgccgatgtgcgggcg
agcgcgcccgcgacgctgttcgcggccgtggtcgagcatctggcccaggcgcgcctgccg
cgccgccatgtggccgtggccgccatgagcgaaggcagccgcgaccggctggagcatctg
ctggccgagcatgggctcgagcgccatgagcgggtggccgatctcgaggccatccgccgc
ctgccgcgcgaccgcgtcgccttcgtggtcctcgggctcgagcatggcttcgagacgccg
gacctcgtggtggtggccgagcaggatatcctcggcgaccggctggcgcgcccggcgcag
cggcgcaagaagaccgaccagttcctgaccgagctcgcgaacttctcgcatggcgacctg
gtggtgcatgtcgagcatggcgtgggccgctatgaggggatcgagacgctggagatcggc
ggcgcgccccatgattgcctcaaggtcatctatgacggcggcgacaagctctatgtgccg
gtcgagaacatcgacgtgctgtcgcgcttcggctcggacgatctgccggtgccgctcgac
aagctgggcggggccggctggcaggcgaggaaggcccgggtcaagcagcggctgcgcgag
atcgcccagcagctcatccgcacggccgccgcgcgcgccgtccatccgggcgtgaccttg
gcgccgcccgaagggctctatgacgagttcgccgcgcgcttcccctatgccgagaccgag
gaccagcagcgcgcgatcgacgaggtcacagccgatctcgcctccggccggccgatggac
cgcctcgtctgcggcgatgtcggcttcggcaagaccgaggtggcgctgcgcgcggccttc
gtcgccgccgcggccggctaccaggtcgcggtggtgacgccgaccaccttgctctgccgc
cagcacagcaagaccttcaccgagcgcttcgccggcctgccgatccgcgtggcgcaattg
tcgcggctggtctcgaccaaggacgccaaccaggtgaaggccgacctcaaggccggcaag
gtcgacatcgtcgtgggcacccattcgctcctcgccaagagcgtcgagttcgccaacctg
ggcctgatgatcgtcgacgaggagcagcatttcggcgtggcgcagaaggagcggctcaag
gagctgcgtgccgacgtccatgtgctgaccctgaccgcgacgccgatcccgcgcaccttg
cagctcgccttgtcgggcgtgcgcgagatgagcctgatctcgacgccgccggtggaccgg
ctcgccgtgcggaccttcgtgctgccctacgatccggtggtgatccgcgaggcgatcctg
cgcgagcattaccgcggcgggcagagcttctatgtggtgccgcgcatcgaggatctcgac
aaggtggccgagcggctgcgcaacctggtgccggagatcaagttcgtgatggcgcatggc
cgcatggcgccgacccatctcgagaaggcgatgacggccttctacgaccgccagtacgac
atgctgcttgccaccaacatcatcgagagcggcctcgatatcccgaccgccaacacgatg
gtgatccaccgctccgacatgttcggcctggcgcagctctatcagctgcgcgggcgcatc
ggccgctccaagcagcgcggctatgcctacctgaccctgccgccgggccgcgtgctcagc
ccgaccgccgccaagcggctccaggtcatgcagacgctggatacgctgggcgcgggcttc
acgctggcgagccacgatctcgacatccgcggtgccggcaatctcctgggcgacgagcag
tccggccatatccgcgaggtcggcgtcgagctctaccagcagatgctcgaggacgccgtc
aaggaagcgcgcggccaggccaaggcggcccaggaatggaccccgcagatcagcatcggc
atgccggtgctgatcccggagaattatgtcgccgatctcggcgtgcggttgggtctctac
cggcgcatcgcgaccctggtggacaaggccgagatcgacgccttcggtgccgagctgatc
gaccgcttcgggccgttgccggcggaggtcgagaacctgctcggcatcatcgccatcaag
cagctctgccgccaggcggggatcgagaaggtcgatgccggtcccaagggggcggtgctg
tccttccgccataaccgcttcgccaagccggccgagctcatcgccttcatcaaccgcaag
caggacgaggtttccgtgcggcccgaccacaagctggtctggcgccaggactggaaggat
gcgaaccggcgggtggcgggcgtgcagggattgctcgcgcatttggctaaaatggcggcg
tga
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