Hypericibacter adhaerens: FRZ61_26180
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Entry
FRZ61_26180 CDS
T06413
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hadh
Hypericibacter adhaerens
Pathway
hadh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hadh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FRZ61_26180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hadh03400
]
FRZ61_26180
Enzymes [BR:
hadh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FRZ61_26180
DNA repair and recombination proteins [BR:
hadh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FRZ61_26180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEX22686
UniProt:
A0A5J6N6V5
LinkDB
All DBs
Position
complement(3001982..3004651)
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AA seq
889 aa
AA seq
DB search
MRAGRRRKAAPRDKSLARYRAKRDFEATPEPRGAQGRSGGRRYLIQKHAARRLHYDFRLE
MDGVLKSWAVTRGPSLDPADKRLAVHVEDHPLAYGDFEGTIPKPQYGGGTVMLWDEGSWE
PLGDPDAMMRAGRLKFRLEGERLKGEWNLVRMRRRSPRDKHDNWLLIKGRDGEAKPGDGG
ALLEEADRSVRSGRSMEEIARGSSVWHSNRGDAGADGRDAAKAARPKPSPAKTVKAAGKR
GRLPDFVEPQLATRVGAPPAGEGWVHEIKLDGYRIQARLDGGKVSLLTRRGLDWCKRFPA
IAKAVGALPAKTALLDGEIVAFEADGLSNFGQLQAILSGDEQGELAFVLFDLLYLDGQDL
RALPLLERKARLLGLLGATERGVLRFSQHFDRDGGEIYRHACELALEGVVSKRAQDPYRS
GRGTGWLKSKCRERQEFVIGGFTRPAKGRPGVGALLLGYGDGGRLRYAGRVGTGFGRAQS
LALRRRLEPIRQDEPPFAAIPAAARRGVTYVEPSLVCETEFATWTRDGLVRQASFLGLRE
DKPASEITREKVMRRASRSPGPAEPEKPTVAASRKRKATAAGKAESGAKGEQDFHGVRLT
HPGRLLYEEPAISKLDLAQYYVDVADRIMPHVKHRPLAIVRCPDGASGTCFFQKHLSAGM
PDAIKPFSVKSKEGARESYVSIEDERGLIALVQFGVLEIHPWGASADDVDKADRIIFDLD
PDPKVEWPDVIAAAKEVRDRLQELKLESFVKTTGGKGLHVVAPLRPAVAWEPVKRLTQAI
AFSMAADKPALYLAKSSKAARGGKIFIDYLRNDRGSTAVAPYSTRARAGAPISAPLDWRE
LNARLRSDRYRLGNIRDRLAALPRDPWEGFFDIRQSLGAKTLSALKTSR
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgagggcagggcggcggcggaaggcggctccccgggacaaatcgctggcgcgctatcgg
gccaagcgggatttcgaggccacgcccgaaccgcgcggcgcccagggacgaagcgggggt
cgccgctatctgatccagaagcatgcagcgcgccggctgcattacgactttcggctggag
atggacggcgtcctcaagagctgggcggtgacgcgcggtcccagcctcgatcccgccgac
aagcgcctggcggtgcatgtcgaggatcatccgctggcctatggcgacttcgaggggacc
attcccaagccgcaatatggcggcggcaccgtcatgctctgggacgaggggagctgggaa
ccgctgggcgaccccgacgccatgatgcgggcgggccggctcaagttccgcctggagggg
gagcggctcaagggcgaatggaacctggtgcggatgcgccgccgctcgccgcgcgacaag
cacgacaactggctcctgatcaaggggcgcgacggcgaagcgaagcccggtgacggcggc
gccctcctcgaggaggcggatcgcagcgtgcgctccggccgcagcatggaggagatcgcc
cgcggctcatcggtctggcacagcaaccggggcgatgcgggcgccgacggccgagatgcc
gcgaaggcggcgaggccgaagccgtctcctgcgaagacggtcaaggccgccggcaagcgc
ggcaggctgccggatttcgtcgagccgcagctcgccacccgtgtcggggcgccgcccgcg
ggcgaaggctgggtgcatgagatcaagctcgacggctaccgcatccaggcgcggctcgat
ggcggcaaggtctcgcttctgacaaggcgcgggctcgattggtgcaagcgctttcccgcc
atcgcgaaagcggtcggggccttgcccgcgaagacggcgctgctcgacggcgagatcgtg
gcgttcgaggccgacgggctctccaatttcggccagctgcaggccatcctctccggtgac
gagcaaggcgagctcgccttcgttctgttcgatctgctctatctcgacggccaggatctg
cgcgcgttgccgcttctcgaacgcaaagccaggcttctcgggctgctcggcgccaccgaa
cgcggcgtcctgcggttcagccagcatttcgatcgcgatggcggcgagatctatcgccat
gcctgcgagctggcgctggaaggcgtggtctcgaagcgcgcccaggatccgtaccgctcc
ggccgcggcacgggctggctcaagtccaaatgccgcgagcgccaggagttcgtcatcggc
ggcttcacccgcccggccaagggacggcccggcgtcggcgcgctgctcctgggctatggc
gacggcggccgtctccgctatgctggccgggtcggcaccggcttcggccgggcgcaatcg
ctcgcgctgcggcgcaggctcgaaccgatccgccaagacgagccgcccttcgcggcgatc
cccgccgcagcccgacgcggcgtgacttatgtcgagccgagcctggtgtgcgaaaccgag
ttcgccacctggacccgggacgggctcgtccgtcaggcctccttcctgggcttgcgggaa
gacaagccggccagcgagattacgcgggagaaggtgatgcgacgcgcaagcaggagcccg
gggccggcggaaccggaaaagcccaccgtcgcggccagccgcaaacgcaaggcgacagcc
gccggcaaagcggaatcgggtgcgaagggcgagcaggatttccatggcgtgcggctcact
catcccgggcgtcttctctacgaagagccggcgatcagcaagctcgatctcgcccaatac
tatgtcgatgtcgccgaccggatcatgccgcacgtcaagcaccggccgctggcgatcgtc
cgctgcccggacggggccagcgggacctgcttcttccagaagcatctctccgcgggcatg
ccggacgcgatcaagcccttctcggtcaagagcaaggagggggcgcgcgaaagctatgtc
tcgatcgaggatgagcgcgggctgatcgcgctggtgcagttcggcgtgctggagatccat
ccctggggcgcttcggccgacgatgtcgacaaggccgaccgcatcatcttcgacctcgat
ccggatccgaaggtcgagtggcccgacgtgatcgcggcggcgaaggaagtccgcgaccgt
ctgcaggagctgaaactcgagagcttcgtcaagaccacgggcggcaaaggcctccatgtg
gtggcgccgctgcggccggccgtcgcctgggagccggtcaagcgcctgacccaggcgatc
gccttcagcatggccgcggacaagcccgcgctctatctggccaaatcgtccaaggccgcg
cgcggcggcaagatcttcatcgactatctgcgcaacgatcgcggctccacggcggtggcg
ccgtactcaacccgggcgcgggcgggcgcgccgatctcggcgccgctcgactggcgggaa
ctgaacgcccggctccggtccgatcgttatcggctgggcaacatccgggaccggttggcg
gcgttgccgcgcgatccgtgggaagggttcttcgacatccggcagagcctgggtgcgaag
accttgagcgcgttgaagacttcgcgctga
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