KEGG   Hypericibacter adhaerens: FRZ61_26180
Entry
FRZ61_26180       CDS       T06413                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hadh  Hypericibacter adhaerens
Pathway
hadh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hadh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FRZ61_26180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hadh03400]
    FRZ61_26180
Enzymes [BR:hadh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FRZ61_26180
DNA repair and recombination proteins [BR:hadh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FRZ61_26180
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QEX22686
UniProt: A0A5J6N6V5
LinkDB
Position
complement(3001982..3004651)
AA seq 889 aa
MRAGRRRKAAPRDKSLARYRAKRDFEATPEPRGAQGRSGGRRYLIQKHAARRLHYDFRLE
MDGVLKSWAVTRGPSLDPADKRLAVHVEDHPLAYGDFEGTIPKPQYGGGTVMLWDEGSWE
PLGDPDAMMRAGRLKFRLEGERLKGEWNLVRMRRRSPRDKHDNWLLIKGRDGEAKPGDGG
ALLEEADRSVRSGRSMEEIARGSSVWHSNRGDAGADGRDAAKAARPKPSPAKTVKAAGKR
GRLPDFVEPQLATRVGAPPAGEGWVHEIKLDGYRIQARLDGGKVSLLTRRGLDWCKRFPA
IAKAVGALPAKTALLDGEIVAFEADGLSNFGQLQAILSGDEQGELAFVLFDLLYLDGQDL
RALPLLERKARLLGLLGATERGVLRFSQHFDRDGGEIYRHACELALEGVVSKRAQDPYRS
GRGTGWLKSKCRERQEFVIGGFTRPAKGRPGVGALLLGYGDGGRLRYAGRVGTGFGRAQS
LALRRRLEPIRQDEPPFAAIPAAARRGVTYVEPSLVCETEFATWTRDGLVRQASFLGLRE
DKPASEITREKVMRRASRSPGPAEPEKPTVAASRKRKATAAGKAESGAKGEQDFHGVRLT
HPGRLLYEEPAISKLDLAQYYVDVADRIMPHVKHRPLAIVRCPDGASGTCFFQKHLSAGM
PDAIKPFSVKSKEGARESYVSIEDERGLIALVQFGVLEIHPWGASADDVDKADRIIFDLD
PDPKVEWPDVIAAAKEVRDRLQELKLESFVKTTGGKGLHVVAPLRPAVAWEPVKRLTQAI
AFSMAADKPALYLAKSSKAARGGKIFIDYLRNDRGSTAVAPYSTRARAGAPISAPLDWRE
LNARLRSDRYRLGNIRDRLAALPRDPWEGFFDIRQSLGAKTLSALKTSR
NT seq 2670 nt   +upstreamnt  +downstreamnt
atgagggcagggcggcggcggaaggcggctccccgggacaaatcgctggcgcgctatcgg
gccaagcgggatttcgaggccacgcccgaaccgcgcggcgcccagggacgaagcgggggt
cgccgctatctgatccagaagcatgcagcgcgccggctgcattacgactttcggctggag
atggacggcgtcctcaagagctgggcggtgacgcgcggtcccagcctcgatcccgccgac
aagcgcctggcggtgcatgtcgaggatcatccgctggcctatggcgacttcgaggggacc
attcccaagccgcaatatggcggcggcaccgtcatgctctgggacgaggggagctgggaa
ccgctgggcgaccccgacgccatgatgcgggcgggccggctcaagttccgcctggagggg
gagcggctcaagggcgaatggaacctggtgcggatgcgccgccgctcgccgcgcgacaag
cacgacaactggctcctgatcaaggggcgcgacggcgaagcgaagcccggtgacggcggc
gccctcctcgaggaggcggatcgcagcgtgcgctccggccgcagcatggaggagatcgcc
cgcggctcatcggtctggcacagcaaccggggcgatgcgggcgccgacggccgagatgcc
gcgaaggcggcgaggccgaagccgtctcctgcgaagacggtcaaggccgccggcaagcgc
ggcaggctgccggatttcgtcgagccgcagctcgccacccgtgtcggggcgccgcccgcg
ggcgaaggctgggtgcatgagatcaagctcgacggctaccgcatccaggcgcggctcgat
ggcggcaaggtctcgcttctgacaaggcgcgggctcgattggtgcaagcgctttcccgcc
atcgcgaaagcggtcggggccttgcccgcgaagacggcgctgctcgacggcgagatcgtg
gcgttcgaggccgacgggctctccaatttcggccagctgcaggccatcctctccggtgac
gagcaaggcgagctcgccttcgttctgttcgatctgctctatctcgacggccaggatctg
cgcgcgttgccgcttctcgaacgcaaagccaggcttctcgggctgctcggcgccaccgaa
cgcggcgtcctgcggttcagccagcatttcgatcgcgatggcggcgagatctatcgccat
gcctgcgagctggcgctggaaggcgtggtctcgaagcgcgcccaggatccgtaccgctcc
ggccgcggcacgggctggctcaagtccaaatgccgcgagcgccaggagttcgtcatcggc
ggcttcacccgcccggccaagggacggcccggcgtcggcgcgctgctcctgggctatggc
gacggcggccgtctccgctatgctggccgggtcggcaccggcttcggccgggcgcaatcg
ctcgcgctgcggcgcaggctcgaaccgatccgccaagacgagccgcccttcgcggcgatc
cccgccgcagcccgacgcggcgtgacttatgtcgagccgagcctggtgtgcgaaaccgag
ttcgccacctggacccgggacgggctcgtccgtcaggcctccttcctgggcttgcgggaa
gacaagccggccagcgagattacgcgggagaaggtgatgcgacgcgcaagcaggagcccg
gggccggcggaaccggaaaagcccaccgtcgcggccagccgcaaacgcaaggcgacagcc
gccggcaaagcggaatcgggtgcgaagggcgagcaggatttccatggcgtgcggctcact
catcccgggcgtcttctctacgaagagccggcgatcagcaagctcgatctcgcccaatac
tatgtcgatgtcgccgaccggatcatgccgcacgtcaagcaccggccgctggcgatcgtc
cgctgcccggacggggccagcgggacctgcttcttccagaagcatctctccgcgggcatg
ccggacgcgatcaagcccttctcggtcaagagcaaggagggggcgcgcgaaagctatgtc
tcgatcgaggatgagcgcgggctgatcgcgctggtgcagttcggcgtgctggagatccat
ccctggggcgcttcggccgacgatgtcgacaaggccgaccgcatcatcttcgacctcgat
ccggatccgaaggtcgagtggcccgacgtgatcgcggcggcgaaggaagtccgcgaccgt
ctgcaggagctgaaactcgagagcttcgtcaagaccacgggcggcaaaggcctccatgtg
gtggcgccgctgcggccggccgtcgcctgggagccggtcaagcgcctgacccaggcgatc
gccttcagcatggccgcggacaagcccgcgctctatctggccaaatcgtccaaggccgcg
cgcggcggcaagatcttcatcgactatctgcgcaacgatcgcggctccacggcggtggcg
ccgtactcaacccgggcgcgggcgggcgcgccgatctcggcgccgctcgactggcgggaa
ctgaacgcccggctccggtccgatcgttatcggctgggcaacatccgggaccggttggcg
gcgttgccgcgcgatccgtgggaagggttcttcgacatccggcagagcctgggtgcgaag
accttgagcgcgttgaagacttcgcgctga

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