Halohasta litchfieldiae: halTADL_1648
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Entry
halTADL_1648 CDS
T05239
Name
(GenBank) transcription initiation factor TFIIB
KO
K03124
transcription initiation factor TFIIB
Organism
hae
Halohasta litchfieldiae
Pathway
hae03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hae00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
halTADL_1648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hae03021
]
halTADL_1648
Transcription machinery [BR:
hae03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
halTADL_1648
Prokaryotic type
Archaeal type
TFB
halTADL_1648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
TF_Zn_Ribbon
Sigma70_r4
Cyclin_C
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
ATW88403
LinkDB
All DBs
Position
1588759..1589715
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AA seq
318 aa
AA seq
DB search
MTRSTRQRADSQTQHNKGDTSEEIDLDDVDPEDVVRTSDGELIHEETGLILEDDQIDRGP
EWRAFTHSERQDKSRVGAPTTKTMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMHRLRKWQ
ERIRTKDAGERNLQFALSETDRMASALGVPRSVREVSSVIYRQALNEDLIRGRSIEGVST
AALYAACRKEGIPRSLEEIAEVSRVERKEIGRTYRYISQELGLEMRPVDPKRYVPRFSSQ
LDLSEEVQAKAKEIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNQKKTQREVADVAQVT
EVTIRNRYQEQIEAMGLS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgacacggtcaacccgccagcgtgcagacagtcagacacagcacaacaagggcgacaca
tccgaggaaatcgatctggatgacgtcgaccccgaagacgtcgtccgaacgtcggatggc
gaactcattcacgaagagacagggctcatactcgaagacgatcagatcgaccgcggtccc
gagtggcgggcgttcacccattcggaacgacaggacaaatcccgggtcggtgcccccacg
accaaaacgatgcacgacaaggggttgacgaccaccatcgactggaaaaatcaagatgcc
tacggacggtcgctgtcctcggaaaagcggagtcagatgcaccgactccggaaatggcag
gagcgcatccggaccaaggacgccggcgagcgcaacctccagttcgcgctcagcgagacc
gaccggatggccagcgcactgggtgtcccgcggtcggtacgagaggtctcgtcggtcatc
taccggcaggcactcaacgaggacctgattcgcgggcgctccatcgagggcgtgtcgacg
gccgcgctgtatgcggcctgtcggaaggaaggcatcccgcgaagcctcgaagagatcgcg
gaggtctcccgtgtcgagcgcaaggagatcggccggacctaccgctacatttcccaggaa
ctcggcctcgaaatgcggccggtcgaccccaaacggtacgtcccccgatttagctcacag
ttggatctcagcgaggaagtccaagcgaaagccaaagagatcatcgacacgaccgccgag
cagggcctgctctcggggaagtcgccgaccggctttgcagcggccgcgatctacgcagcc
tcgctgctctgcaaccagaagaagacccaacgcgaggttgccgacgttgcccaagtgacc
gaagtgacgattcggaaccggtatcaagaacagatcgaagcgatgggtctctcctga
DBGET
integrated database retrieval system
