Hymenobacter aerilatus: MUN82_19920
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Entry
MUN82_19920 CDS
T09397
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
haei
Hymenobacter aerilatus
Pathway
haei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
haei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUN82_19920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haei03400
]
MUN82_19920 (mfd)
Enzymes [BR:
haei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUN82_19920 (mfd)
DNA repair and recombination proteins [BR:
haei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUN82_19920 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UOR05192
UniProt:
A0A8T9SSS9
LinkDB
All DBs
Position
complement(4761278..4764775)
Genome browser
AA seq
1165 aa
AA seq
DB search
MKVTDFLQLYRLDPTVLTVGARLNPATLRSLKKAEAATDTPLPRLHLRGLVGSQDAVLAA
TLHTLYPEQHHLFILHDKEEASYFLADLQHLLPQAEPLLFPSSYKRPYEFDETENANVLM
RAEVLNRLSGSKGSKGQKAVEPTPEVEEKQPETQSVGALIVTYPEALFEKVINRKSLVAN
TFSVQVGEKLDVNFIGEMLGEYDFERTDFVYEAGQYAVRGGIVDIFSYANELPYRIELFG
DEVESIRTFNPETQLSVDRKQQISIIPNVQTKLLQETREAFLDFLPRNLTVWAKDVRLTL
DVVDESFDKADAGFQRLLESAGGTQIVSKPADLFETAKTFRKQLENFAVVEFGKRFHFKT
GAEEFAFTAKPQPSFNKEFPRLLKNLRDYQQQGFTSIIAADSVRQADRLRTIFDELDNNV
QFQHLLLALREGYVDEQLKLTVYTDHQLFERYYRAQETRKFSKKKALTLKELRTLQPGDY
VVHQDHGIARFAGLMQVDINGQLQEAIRLVYRDDDVLTVSIHALHKIAKYSGAEGTPPTM
SKLGSPEWENKKKAVKKKVKDIAAELIRLYAKRKTAPGFAFAKDSFMQAELESSFIYEDT
PDQGKATEDVKHDMEQPHPMDRLVCGDVGFGKTEVAIRAAFKAAADGKQVAILVPTTILA
MQHYKTFRDRLSELPVTVEYINRFKTTKQIKDTLGRVAEGKTDILIGTHRLTNKDVKFKD
LGLLVIDEEQKFGVKTKDKLKELKVNVDTLTLSATPIPRTLHFSLMGARDLSVIATPPPN
RQPVQTELHVFDEVLVRDAISRELKRGGQVFYVHNRVKDIEEQAAMILRLVPDARVTYVH
GQMDGDALEKRMMKFVDGEYDVLVSTTLIESGLDIPNANTIIINRAHMHGLSDLHQMRGR
VGRSNKKAYCYLLTPPVAGLPSDARKRLSTLEEFSDLGAGFNVAMRDLDIRGAGNLLGGE
QSGFINDLGFETYHQILDDAVQELKETEFRDLFLGDTTGRLQEAAGTKGPKECNVETDLQ
ILIPDSYVSSVSERLQLYSKLDRVKDPEALRKLVASIVDRFGPLPAEVEQLADIVKLRWQ
ACRVGFEKVTLKKNVLKAYVPATNNEAYFQGDQFGTVLNYVQTHPRTATMKERKEQLIIT
IDDVKNVQAAKRVLSELGSEEKVGV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggtcactgatttcctccagctctaccgcctcgacccgactgtgctgacggtgggc
gcccgcctgaatccggctacgcttcgctcgcttaagaaagccgaggcggctactgatact
cctctaccccgcctgcacctgcgcgggctggtaggcagccaagacgcagtgctggccgct
accctgcacacgctctaccccgagcagcaccacctgttcatcctgcacgacaaggaggaa
gcctcttacttcctggccgacttgcagcacttgcttccgcaggccgagcctttgctgttc
cctagttcctacaagcgcccctacgagttcgacgagactgaaaacgccaatgtgctgatg
cgcgccgaggtgctgaaccgcctcagcggcagcaagggtagcaaaggccagaaagccgtg
gagcctacccccgaggtggaggaaaagcaaccagagacgcaatcggtcggtgcccttatc
gtcacataccccgaggcgttgttcgagaaggtaatcaaccgcaagagcttggtggcaaat
accttttcggtgcaggtaggcgagaagctggacgtgaacttcatcggggagatgctgggg
gagtacgacttcgagcggacggactttgtgtacgaggccgggcaatacgccgtgcgcggg
ggcattgtggatatcttcagctacgccaacgagctaccctaccgcatcgaactatttggg
gatgaggtggagagtattcgcacgttcaaccctgaaacgcagctttcggtagaccgcaag
cagcagatcagcatcatcccgaacgtgcagaccaagctgctgcaagaaacccgcgaggcc
ttcctggatttcctaccccgcaacctgacggtatgggccaaggacgtgcgcctgacgctg
gacgtggtggacgaatcgttcgataaggccgacgcgggctttcagcggctgctggaatcg
gcgggcggtacgcagattgtgagcaagccggccgatttgtttgagacggccaagaccttc
cgcaagcagttggaaaactttgcggtggtggagttcggcaagcggtttcacttcaagacc
ggggccgaggagtttgctttcacagccaagccccagcccagcttcaacaaggagtttccg
cgcctgctcaaaaacctgcgcgactaccagcagcagggtttcaccagcatcatcgcggcc
gactcggtgcggcaggccgaccggctccgcaccatcttcgatgagctagacaacaacgtg
cagtttcagcacctcctacttgctctgcgcgagggctacgtggatgagcagttgaagctg
accgtatataccgaccaccagctgtttgagcgctactaccgcgcccaggaaacccgcaag
ttcagcaagaaaaaggctcttaccctgaaagagctgcgcaccttgcagcctggcgactac
gtggtgcaccaggaccacggcattgcgcgcttcgcggggctgatgcaggtggacatcaac
gggcagttgcaggaggccatccggctggtgtaccgcgacgacgacgtgctgaccgtgagc
attcacgccctgcacaagattgccaagtacagcggagccgagggcacgccgcctaccatg
agcaagctgggctcgccggagtgggaaaacaagaaaaaggccgtcaagaagaaggtgaag
gacattgcggccgagctgattcggctgtacgccaagcgcaagactgcgccgggctttgcc
ttcgccaaggactcgtttatgcaggccgagctggaatcgagctttatctacgaggacacg
cccgaccagggcaaggccaccgaagacgtaaagcacgacatggagcaaccccaccccatg
gaccgcctcgtgtgcggcgacgtgggcttcggcaagaccgaggtagccattcgggctgcc
ttcaaggctgcggccgatggcaagcaggtagcgatattggtgccgacgaccatcctggct
atgcagcactacaaaaccttccgcgaccggctctcggagctgcccgtgacggtggagtac
atcaaccgcttcaagaccaccaagcagatcaaggacacgctgggtagggtggcggagggc
aaaaccgatattctcatcggcacgcaccgcctcaccaacaaagacgtgaagttcaaggac
ttgggcctgctggtgattgacgaggagcagaagttcggggtgaaaaccaaggacaagctg
aaggagctgaaggtgaacgtggacacactcacgctctcggctacgcctattccgcgcacg
ctgcacttctccttgatgggtgcccgcgacctttctgtaattgctaccccgccgcccaac
cgccagccggtgcaaacggagttgcacgtgtttgatgaggtgctggtgcgcgacgccatt
tcgcgggagctgaagcgcggcgggcaggtgttctacgtgcacaaccgcgtaaaagacatt
gaggaacaagcggctatgatcttgcgcctggtgcccgacgcccgcgtgacctacgtgcac
ggccagatggacggcgacgcgctggaaaagcgcatgatgaagttcgtggatggcgagtac
gacgtgctggtgagcaccacgctcatcgagtcgggcctggatattcctaatgccaacacc
atcatcatcaaccgcgcccacatgcacggcctctccgacctgcaccagatgcgcgggcgg
gtagggcgctccaacaagaaggcctattgctacctgctcacgccgcccgtggccggccta
ccctccgacgcccgcaagcgcctgagcacgctggaagaattctcggacctgggcgcgggc
ttcaacgtggccatgcgcgacctcgacattcggggcgcgggcaacctgctgggcggcgag
cagtcgggctttatcaacgacctgggctttgaaacctaccaccagatcctggacgacgcg
gtgcaggagttgaaggaaaccgagttccgcgacctgttcttgggcgacaccaccggccgc
ctccaggaagctgctggcaccaaaggccccaaggagtgcaacgtggaaaccgacctgcaa
atcttgattccggacagctacgtgagcagcgtgtcggagcgcttgcaactctacagcaag
ctcgaccgcgtgaaggaccccgaggccctgcgcaagctggtggccagcatcgtggaccgc
ttcggccccctacccgccgaggtagagcaactggccgacatcgtgaagctgcgctggcag
gcctgccgcgtgggcttcgagaaggtgacgctgaagaagaacgtgctgaaagcctacgtg
cccgctaccaacaacgaggcctacttccagggcgaccagttcggcacggtgctcaactac
gtgcaaactcacccccgcaccgccaccatgaaggagcgcaaggaacagctcatcatcacc
atcgacgacgtgaagaacgtgcaagcagccaagcgggtgctgagtgagttgggcagtgag
gagaaggtaggggtgtag
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