Halomonas sp. GFAJ-1: BB497_13820
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Entry
BB497_13820 CDS
T05375
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BB497_13820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hag03400
]
BB497_13820
Enzymes [BR:
hag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BB497_13820
DNA repair and recombination proteins [BR:
hag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BB497_13820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
AAA_30
AAA_22
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AVI63708
UniProt:
H0IYZ1
LinkDB
All DBs
Position
3064070..3067564
Genome browser
AA seq
1164 aa
AA seq
DB search
MYDPNSVSAQNDTLLMPSFSLLEPPQPHGTRDTLYLTAPPGSATALALAQVASKAPLLVI
TPSTASAQRLEQDLAFYSTVPVLPFPDWETLPYDSFSPHQDIISARLRTLRQLQDGVRGI
VLVPINTLMQRLPPVEYIAGRVMTLQTGAKLNRETFRESLSRAGYRAVETVYEPGEYAMR
GAIIDLFAMGMDEPIRIDLFDDEIDTLRHFDPGNQRSTDKLDHLELLPAHEYSLSRSAIA
CFREQFETLFDVDPRQSPLYNDALKAIPSPGLEHYLPLFFEQTASLFEHVTDDTRVALLP
GIFQAAEQHWQAIESRYDNLGVDPTRPLIPPHRAFFPVSEVFSAIKARPRIELTEDETHR
HALTPDAQALPTLAINARAKQPLSALANFLEAQPQTRILFAAESRGRREALEEILAPLHL
QLPHVESFHAFLGSQHGMGITESQVGSGLWLTEPNVAVISETELFGDVVRQSRRREKATD
DNELAVRHLSELKEGAPVVHQAHGVGRYMGLETLEAGGQANEFLALYYADGAKLYVPVDS
LHLISRYSGADDELAPLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYDA
PAEEYTRFSASFPFEETPDQQAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLA
VQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNISLISRFTAGKEMTQTLQSIKEGQTD
IVIGTHKLLSKSVELPKIGLLIIDEEHRFGVAQKEKLKTLRAEIDILTLTATPIPRTLNM
AMSGIRDLSIIATPPARRLSVKTFVQQRDNSIIKEALLREILRGGQVYFLHNEVKTIENA
AEQIRELVPEARVAVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTILI
ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMTRDAVKRLEAISASDDLGAGFTL
ASHDMEIRGAGELLGDEQSGQMETIGYTLYMEMLDRAVKAIRAGKTPNIDAPFNNGVEIS
LNLPALIPDDYIHDVQQRLVMYKRIANTQSDAELKELQVELIDRFGLLPAPLKNLIRQTK
LRQRAEQLGVARIEAGESKGRVLFNSATQVDPLTLVMLIQKSPQHYRLDGSDTLRFEFPM
ESVEQRFEKVETLLTTLNQKVAAT
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
gtgtatgatccaaattccgtttcagcgcaaaacgataccttacttatgccttctttctct
ctgctcgaaccaccccagccacacgggactcgcgacacgctttacctcacagcgccgccg
ggcagtgcgactgccctggcactcgcccaggtagcgtctaaggccccactactggtgatc
acacccagcaccgctagcgcccaacgtctggagcaagacctagcattctacagcaccgtg
cctgtcctccccttccctgattgggaaacgctgccttacgacagcttttctccccatcag
gatattatatccgcccgcctacgcaccttacgacagctccaggacggggttcgcgggatt
gtattggttcctatcaacacgttaatgcagcgcctgccgccggtggaatatatcgctggc
cgggtgatgaccttgcaaacaggcgccaagctcaatcgtgaaacgttcagggagtcactc
tcccgagcaggctatcgcgctgttgagaccgtgtatgagccgggtgagtacgctatgcgc
ggcgctattatcgacctttttgccatgggcatggatgaacctatccggattgacctgttt
gatgatgaaattgatacgctgcgtcatttcgacccaggcaaccagcgctctaccgataaa
ctagatcatcttgaacttcttcctgcccacgaatactcgttaagccgtagcgccattgcc
tgctttcgggagcagtttgaaaccctattcgacgttgatccgcgccaaagcccgctctat
aacgacgctctcaaagccataccctcgcccgggctagagcactacctgccgctatttttc
gaacagaccgcatcactttttgaacacgtcactgacgacactcgcgtcgcattactacct
ggcatatttcaagccgccgagcagcattggcaagcgattgagtcacgctacgacaacctt
ggagtagaccccacccggccgttaatacccccacatcgcgcattctttcccgttagtgag
gtcttctcggcgatcaaggcgcggccacgcatagagttaaccgaagatgaaacgcatcgc
catgcgctaacccctgacgcccaagcactgcccaccctggcgattaatgcgcgggcaaaa
cagccgctcagcgcattggccaattttctggaagcccagccccaaacgcgaatccttttt
gctgcagaatccagagggcgcagagaagcactggaagaaattctagcgccgctgcattta
caactgcctcacgtggaaagcttccacgccttcctaggcagccaacacgggatgggcatc
accgaaagccaagttggtagcggcctgtggcttactgaacccaatgtagcggtaattagt
gaaaccgagctatttggtgatgtggttcgccagagccgccgtcgggaaaaagcgaccgat
gataacgagcttgcggttcggcacttgtctgagcttaaggaaggtgcgccggtggtacac
caagcccacggcgtcggccgctatatggggcttgagaccttagaggcgggcggtcaggct
aatgagtttctcgctctctattatgctgatggggcaaaactctacgtgcccgtggatagc
ctgcatctaatttcacgctacagcggcgcagacgacgagctggcgcccttgcataagctg
ggctcagatcagtgggaaaaagcacgccgcaaagccgccgagaaaattcgcgacaccgcc
gcagagctccttgatgtttatgcccggcgagaagcccagcaaggcgtggtttacgatgct
cccgctgaagagtacacccgcttttcggctagcttcccctttgaagaaaccccagaccag
caagccgcaattgaggcggtgatcagcgacatgacctcccctcagcccatggaccgcgtg
gtgtgtggtgatgtggggttcggcaaaaccgaagtcgccatgcgcgcagcgtttctggcc
gtgcagtctggcagacaagttgtggtattagtgcccaccacgctgcttgcccgccaacat
tttgagaacttccgcgaccgctttgccgataccgcggtcaatataagcctgatctcccgt
tttaccgcgggtaaagagatgactcaaacactgcaaagcatcaaagagggtcaaactgat
attgtgattggcactcataagctgctttcaaaaagcgttgagctgccaaaaatagggcta
ttaattattgatgaagagcaccgcttcggggttgctcaaaaagaaaaactcaaaacgctg
cgtgcggaaattgatattttgacgcttactgccacgcccattccacgcacgttaaatatg
gcaatgagcggcattcgagatctctccattattgccacaccacccgcccggcgcctgtca
gtcaaaacctttgtgcaacaacgcgataacagcattattaaagaggcgctcttgcgcgaa
atcttgcgcggcggccaagtctattttttgcacaacgaagttaaaactatcgagaatgcc
gctgagcagatccgagaactggtaccagaagcccgcgtagccgtcgcacacggccagctg
cctgaacgcagtcttgagcgggttatgtcagatttctaccatcggcgctttaacgtgctg
gtgtgctcaacgattatagaaacaggcattgacgtgcccagcgccaacactattttgatt
gagcgtgctgataagttcggccttgcacagctacatcagcttcgcggccgcgtagggcgc
agccaccaccaggcctatgcctatctgctaacgccgccacctaaggctatgacgcgggac
gctgttaagcgtcttgaagctatcagcgcctctgatgatctaggcgctggctttactcta
gccagccacgatatggagatccgcggcgcaggcgagctactgggtgatgagcagagcggc
cagatggaaaccataggctacacgctgtatatggaaatgcttgaccgtgcagtaaaagca
attcgtgcgggcaaaacgcctaacatagacgccccctttaataacggcgtggaaatcagc
ctcaacttacccgccttgatacccgatgactatattcatgacgtacagcagcggctagtc
atgtataagcgtattgccaatactcaaagtgacgcggaacttaaagaacttcaggtagag
cttattgatcgctttggcctgctccctgccccgctgaaaaacttaattcggcagaccaag
cttcgccaacgcgccgaacagctaggcgtggcccgcatcgaagcgggcgagagtaaaggc
cgagtgctatttaacagcgccacacaagtagacccattgacattagtgatgctgattcaa
aaatcaccacagcactaccgtttagacggctcagacactttaaggtttgaattcccaatg
gaatcagtcgaacagcgttttgaaaaggttgaaactctgttgaccacgctgaatcaaaaa
gtagcggcgacgtaa
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integrated database retrieval system
