Hipposideros armiger (great roundleaf bat): 109382426
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Entry
109382426 CDS
T04661
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hai
Hipposideros armiger (great roundleaf bat)
Pathway
hai03013
Nucleocytoplasmic transport
hai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109382426 (UPF1)
03015 mRNA surveillance pathway
109382426 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hai03019
]
109382426 (UPF1)
Enzymes [BR:
hai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109382426 (UPF1)
5.6.2.5 RNA 5'-3' helicase
109382426 (UPF1)
Messenger RNA biogenesis [BR:
hai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109382426 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
109382426 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109382426
NCBI-ProteinID:
XP_019497429
EnsemblRapid:
ENSHARG00000010465
UniProt:
A0A8B7R8P6
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGLGGPGGGGSG
GPVGAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKSRFGLPGPNQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagctcgcagacactcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctt
cccagccagacgcagacgccccccggtggcctcggcggccccggaggtggcggctccggg
ggcccggtcggcgcgggccctggcgctgcggccggacagctcgacgctcaggttggagga
cctgagggcatcctgcagaacggggctgtggatgacagtgtggccaaaaccagccagttg
ttggccgagttgaacttcgaagaagatgaagaggatacctattacacaaaggacctccca
gtacatgcctgcagttactgcggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaaaaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccttgggggagaca
gtcctagagtgttacaactgtggctgccgtaatgtcttcctccttggcttcatccctgcc
aaagccgactcggtggtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctgatccaggaccgctgcttcctg
tcctggctggtcaagatcccttcagagcaggagcagctgcgcgctcggcaaatcactgct
cagcagatcaacaagctggaggagttgtggaaggagaatccttctgccaccttggaggac
ctggagaagccaggagtggacgaggagccacagcacgtcctcctgcggtacgaggatgcc
taccagtaccagaacatattcgggcctctggtcaagctagaggctgactacgacaagaag
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcctgcgatacaaaggg
gatctggcacccctgtggaaagggattggccacgtcatcaaggtccctgataattatggc
gatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacgcataac
ttccaggtggatttcgtgtggaagtccacctcgtttgacaggatgcagagcgcactgaag
acttttgccgtggatgagacctccgtgtcaggttacatctaccataagctgcttggccac
gaggtggaggacgtgatcatcaagtgccagctacccaagcgcttcacagcacaggggctg
cctgacctcaatcactctcaggtttatgctgtgaagactgtgctgcagagaccactgagc
ctgatccagggaccaccaggcacggggaagacggttacctcggccaccattgtctaccac
ctcgcgcggcaaggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggat
cagctgaccgagaagatccaccagactgggctgaaagtcgtgcggctctgtgccaagagc
cgcgaggccatcgactcaccagtgtcgttcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctccagaagctgcagcagctaaaggacgagactggagaactgtcg
tctgctgatgagaagcggtaccgggccctgaagcgcacggctgaaagggagctcctcatg
aacgcagatgtgatctgctgcacgtgtgtgggcgcgggagaccccaggctcgccaagatg
cagttccgctccattctaatcgatgagagcacccaggccactgagccagagtgcatggtc
cctgtggtcctcggagccaagcagctgatccttgtgggagatcactgccagctgggtcct
gtcgtgatgtgcaagaaggcggccaaggccgggctgtcccagtcactgtttgagcgccta
gtggtgctgggcattcgtccaatccgcctgcaggtccagtatcggatgcaccctgcgctc
agcgcctttccttcaaacatcttctatgagggttctctgcagaacggagtcactgcagcg
gatcgtgtgaagaaagggtttgacttccagtggccccaacctgataagccgatgttcttc
tacgtgacccagggccaggaggagatcgccagctcgggtacctcctacctgaacaggacg
gaggctgcaaacgtggagaagattaccacaaagctgctgaaggcaggtgccaagccagac
cagatcggcatcatcacgccatacgagggccagcgctcgtacctggtgcagtacatgcag
ttcagcggctcactgcacaccaagctctaccaggaggtggaaattgccagcgtggatgcg
ttccaggggcgtgagaaagacttcatcatcctttcctgtgtgcgggccaacgagcaccaa
ggcattgggtttttaaacgatcccaggcggcttaacgtggccctgacccgagcacgatat
ggggtcatcattgtgggcaatcccaaagcactgtctaagcagccactctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtagaggggcccctgaacaacctgcgggag
agcctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccctggcgcccgc
ttcatgaccacagccatgtatgatgcccgggaggccatcatcccaggatcggtctatgac
cggagcagccagggccggccctcaaacatgtacttccagacccatgaccagctcggcatg
atcagcgctggccccagccacgtggccgccatgaacatccccatccccttcaacctggtc
atgccacccatgccacccccagggtactttggacaggctaacggaccagctgcaggccgg
ggtaccccaaaaggcaagaccggtcgtggcggacgccaaaagagccgctttgggcttcct
gggcccaaccagacgaacctgcccagcagccaggctagccaggatgtggcgtcacagccc
ttctcgcagggcgccctgactcagggctacatctccatgagccagccttcccagatgagc
cagcccggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcccagatcgatgttgcgctgtcacaagattccacataccagggggagagggcataccaa
cacggcggagttacggggctgtcccagtactag
DBGET
integrated database retrieval system