KEGG   Haloplanus rubicundus CBA1113: DU500_13615
Entry
DU500_13615       CDS       T05613                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
haj  Haloplanus rubicundus CBA1113
Pathway
haj03030  DNA replication
haj03410  Base excision repair
haj03420  Nucleotide excision repair
haj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:haj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DU500_13615
   03410 Base excision repair
    DU500_13615
   03420 Nucleotide excision repair
    DU500_13615
   03430 Mismatch repair
    DU500_13615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:haj03032]
    DU500_13615
   03400 DNA repair and recombination proteins [BR:haj03400]
    DU500_13615
Enzymes [BR:haj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DU500_13615
    6.5.1.6  DNA ligase (ATP or NAD+)
     DU500_13615
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     DU500_13615
DNA replication proteins [BR:haj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    DU500_13615
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     DU500_13615
DNA repair and recombination proteins [BR:haj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DU500_13615
   NER (nucleotide excision repair)
    Other NER factors
     DU500_13615
   MMR (mismatch excision repair)
    Other MMR factors
     DU500_13615
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase EccE
Other DBs
NCBI-ProteinID: AXG07377
UniProt: A0A345E5A5
LinkDB
Position
complement(2674589..2676244)
AA seq 551 aa
MDFADFADRVAAIEAEPADLEVTSLVADLFVDAGADLPVVARLLLGRVVPAWDSTTLDVG
PSLCHEALARAAGPNVTADDVADRLADAGEIGAVAESLDLDGQQGLAAFGAADPEPLTVS
AVDSRLRDLAAADGAGSHDHKVEVLFGLFNRADSLSARYLARLVLSEMRIGVGEGIVRDA
IAEAFDVPVAAVERALQVENDCGAVAVRARDEGVAGLDAAELVVGRPVSAMLAQAGTAVD
ALDAWESVAVETKFDGARVQVHHDPAGDTRVFSRNLEDVTDALPEIVEFVAGIDVPVILD
GEALAVDDAGDPLPFQEVLRRFRRKHDVARMREEVTVEFRAFDCLHVDGTDLLDAPLLDR
RERLADVLSDGLSPLAVVDDAEAIADHEAAALDAGHEGIMLKNPDSTYTPGKRGQNWLKR
KPDVETLDLVVTGAEWGEGRRANHLGTFLLSARVGNGEFATIGKVATGITDERLAELSDR
LEPLIREQEGTEVDIEPRVVFEVGYEEIQASPTYGSGYALRFPRFVAVREDKTPAEADSL
ERVERLVGERS
NT seq 1656 nt   +upstreamnt  +downstreamnt
atggacttcgccgacttcgccgaccgcgtcgccgccatcgaggccgaacccgccgacctc
gaagtcacgtcgctggtcgcggacctgttcgtcgacgccggcgccgacctcccggtcgtc
gcccgcctgttgctcggacgcgtcgtccccgcgtgggactccacgaccctcgacgtgggg
ccctcgctctgtcacgaggcgctcgcccgcgccgccgggccgaacgtcaccgccgacgac
gtggccgaccgactcgccgacgccggcgaaatcggtgccgtcgccgagtcgctcgacctc
gacggccagcagggactcgccgcgttcggcgccgccgatcccgagccgctgaccgtctct
gcggtggactctcgactccgtgacctcgccgccgccgacggcgccggcagccacgaccac
aaggtggaggtcctcttcggcctgttcaaccgggccgactcgctctcggcgcgctatctg
gcgcggctcgtcctctcggagatgcggatcggcgtcggtgagggtatcgtccgcgacgcc
atcgccgaggcgttcgacgtgccggtcgcggccgtcgaacgcgccctgcaggtggagaac
gactgcggtgcggtcgccgtccgcgcccgcgacgagggagtcgcggggctcgacgcggcc
gaactcgtcgtcggtcggccggtgagcgcgatgctcgcacaggccggcacggcggtcgac
gccctcgacgcctgggagtcggtcgccgtcgagaccaaattcgacggcgcgcgggtgcag
gtccaccacgacccggcgggcgacacccgcgtgttctcccggaacctggaggacgtgacc
gacgccctgccggagatcgtcgagttcgtcgccgggatcgacgtgcccgtcatcctcgac
ggcgaggcgctcgccgtcgacgacgcgggcgacccgctccccttccaggaggtgctccgg
cggttccggcgcaaacacgacgtggcacggatgcgcgaggaggtgacggtcgagttccgc
gcgttcgactgcctccacgtcgacgggacggacctgctcgacgcgccgctgctcgaccgg
cgcgagcggctggccgacgtgctctcggacggtctctcaccgctcgccgtcgtcgacgat
gccgaggccatcgccgaccacgaggccgccgccctcgacgcgggccacgaggggatcatg
ctcaagaaccccgactcgacctacacgccgggcaagcgggggcagaactggctgaaacgc
aagccggacgtggagacgctggatctcgtggtcacgggtgcggagtggggggaagggcgt
cgggccaaccacctcggcaccttcctgctgtcggcccgggtcgggaacggcgagttcgcc
accatcggcaaggtggcgacgggcatcacggacgagcgactggccgagctgagcgaccgc
ctcgaacccctgatccgggagcaggaggggactgaggtggacatcgagccacgggtcgtc
ttcgaggtgggctacgaggagattcaggcgtcgccgacctacgggtcgggctacgcgctc
cggtttccgcgattcgtcgcggtccgggaggacaagacgccggcggaggcggactcgctg
gagcgggtggagcggctggtcggggagcggagttga

DBGET integrated database retrieval system