KEGG   Haloterrigena alkaliphila: J0X25_16200
Entry
J0X25_16200       CDS       T07793                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hakz  Haloterrigena alkaliphila
Pathway
hakz03030  DNA replication
hakz03410  Base excision repair
hakz03420  Nucleotide excision repair
hakz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hakz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    J0X25_16200
   03410 Base excision repair
    J0X25_16200
   03420 Nucleotide excision repair
    J0X25_16200
   03430 Mismatch repair
    J0X25_16200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hakz03032]
    J0X25_16200
   03400 DNA repair and recombination proteins [BR:hakz03400]
    J0X25_16200
Enzymes [BR:hakz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J0X25_16200
    6.5.1.6  DNA ligase (ATP or NAD+)
     J0X25_16200
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     J0X25_16200
DNA replication proteins [BR:hakz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    J0X25_16200
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     J0X25_16200
DNA repair and recombination proteins [BR:hakz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     J0X25_16200
   NER (nucleotide excision repair)
    Other NER factors
     J0X25_16200
   MMR (mismatch excision repair)
    Other MMR factors
     J0X25_16200
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: QSW98906
UniProt: A0A8A2VCJ0
LinkDB
Position
3326249..3328048
AA seq 599 aa
MEFATFADRAAAIEAEPADLESIALVSELLDDAGDDVETVARFVQGRVFPAWDSTKLDIG
PSTCYEAIARAAGTNVSSDDVEERLAEVGEIGAVAASYDFGGQQGLGAFTGGGGSDDGSS
GDGSDDRGSGSGGGGTAGGDLTVGEVADTLADLAAAEGSGSQDRKVDLLFGLFNRCSSEE
ARYLARLVLSEMRIGVGEGTVRDAISEAFDVPTERVERALQVSNDYGQVARVARDEGLEG
LDSMALEVGRPVQAMLAQAGTVTDALEEWDEAAVEWKYDGARIQLHHDPASGGNGESAGE
TRVFSRNMEDVTDALPEVVEFAEETLEEPAILDGEVVAIDEDGAPLPFQEVLKRFRRKHD
VAKAREDVTVRPVFFDCLHAGGEDLLEEPLTARHDRLRAVLADGDDNASLEDATVDDERD
IEGLSLLWTTDDPDEIESIDAGALEAGHEGIMLKDPDSTYSPGRRGKHWRKRKPDVETLD
CVVTGAEWGEGRRATFLGTFELSVRDGDDLETVGKVATGITDEKLAELTELLEPHIAQEE
GQAVDLEPAVVFEVGYEEIQTSPTYSSGYALRFPRFQGVRHDKDSEGADSIERIERLRE
NT seq 1800 nt   +upstreamnt  +downstreamnt
atggagttcgccacgttcgccgaccgggccgccgcgatcgaagccgaacccgccgacctc
gagagcatcgccctcgtcagcgagttgctcgacgatgcgggggacgatgtcgagacggtc
gcccggttcgttcagggacgcgtgttcccggcctgggactcgacgaaactcgacatcggc
ccgtcgacgtgttacgaggcgatcgctcgagcggccgggacgaacgtgagcagcgacgac
gtcgaggagcgactggccgaggtcggcgagatcggcgcggtggccgcgagctacgacttc
ggcggccagcagggactcggcgccttcacggggggcggcgggtccgacgacggcagctct
ggcgatgggtccgacgaccgcggctccggctccggcggtggcggaaccgcgggcggcgac
ctcaccgtcggcgaggtcgccgacacgctcgcggacctcgccgccgccgaagggtcgggg
agtcaggaccgcaaggtcgacctcctcttcgggctcttcaaccgctgctcgagcgaggag
gcccgctacctcgcccgactcgtcctctcggagatgcgcatcggcgtcggcgagggcacg
gtcagggacgcgataagcgaggcgttcgacgtccccacggagcgcgtcgagcgcgctctg
caggtgtcgaacgactacggacaggtggcccgcgtcgcccgcgacgagggcctcgaggga
ctcgattcgatggccctcgaggtcgggcggccggttcaggcgatgctcgcgcaggcgggg
acggtgaccgacgcgctcgaggagtgggacgaggccgccgtggagtggaagtacgacggg
gccagaatccagttgcaccacgatccggcgagcggcggtaacggcgagtcggcgggtgaa
acccgcgtcttctcgcgaaacatggaggacgtcaccgacgcgctccccgaagtcgtcgag
ttcgccgaggaaaccctcgaggagcccgcgattctggacggcgaggtcgtcgcgatcgac
gaggacggcgccccgctccccttccaggaggtgctcaagcgcttccggcggaaacacgac
gtcgcgaaggcccgcgaggacgtgacggttcgccccgtcttcttcgactgcctgcacgct
ggcggcgaggacctgctcgaggagccgctgacggcgcgccacgaccgattgcgggcggtg
ctcgccgacggtgacgacaacgcgtccctcgaggacgcgaccgtcgacgacgagcgagat
atcgaggggctctccctgctctggaccaccgacgaccccgacgagatcgagtccatcgac
gccggggccctcgaggcgggccacgaggggatcatgctcaaggatcccgactcgacctac
tcgccgggacggcggggaaagcactggcggaagcgcaaaccggacgtggagaccctcgat
tgcgtcgtcaccggcgcggagtggggcgagggtcgccgggcgacgttcctcggcacgttc
gaactctccgtccgcgacggtgacgacttggagacggtcgggaaggtcgcgaccggcatc
accgacgagaaactcgcggagttgaccgaactgctcgagccacacatcgcgcaggaggag
ggacaagcggtcgacctcgagcccgcggtcgtcttcgaggtcggctacgaggagatccag
acctcgccgacctactcgtcgggctacgcgctgcgcttcccgcggtttcagggcgtccgt
cacgacaaggattccgagggtgccgactcgatcgagcggatcgaacgccttcgggagtga

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