Halioglobus maricola: EY643_02705
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Entry
EY643_02705 CDS
T06250
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
halc
Halioglobus maricola
Pathway
halc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EY643_02705 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halc03019
]
EY643_02705 (rnr)
03016 Transfer RNA biogenesis [BR:
halc03016
]
EY643_02705 (rnr)
Enzymes [BR:
halc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EY643_02705 (rnr)
Messenger RNA biogenesis [BR:
halc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EY643_02705 (rnr)
Transfer RNA biogenesis [BR:
halc03016
]
Prokaryotic type
tRNA degradation factors
EY643_02705 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
QFU74648
UniProt:
A0A5P9NI22
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All DBs
Position
624381..626735
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AA seq
784 aa
AA seq
DB search
MPKKGKITDPHAKREAAKYENPIASREVILDVLRDANKPLNHNQLAKKLQLASHEDAEAL
RKRLRAMERDGQVMSDRKGAYGLVDKMNLIHCKVQGHRDGYGFAMPLGEGDDVYLSARQM
HFVFDGDEVLVLITGEDRRGRLEGRVVEVLQRGVTTVVGRYQEESGIGFVIPDNGRLTHQ
FLIPPKEKSGAKNGQIVSALITDYPTRQLGAKASITEILGDHMDPGLEIDVAIRSHEIPW
EWPEAVQREAASLEDEPAEEDKRNRKDLRKLPFVTIDGEDARDFDDAVYCEKRRGGWRLY
VAIADVSHYVRPGMALDEEAANRGNSVYFPERVVPMLPEALSNGLCSLKPQVDRLAMVCE
MELNRTGKMLRYEFYEAVIHSHARLTYTQVGEVLNEGWHADVAPERVPDLLLLQELYKVL
RAQRDTRGAIDFDTVETRIIFDEQKKIESIVPVVRNDAHKLIEEAMLCANVAAARFFEAN
QLPILYRVHEGPSEERLEGLRGFLGELGLDLPGGAKPTPLDYQHLLEQVAERDDVHVIQT
MLLRSLSQAQYQPENGGHFGLHYDAYAHFTSPIRRYPDLLVHRGIRSLVRSDKPAEGVFR
VAGAEPIPTRRIFPYDDAAMAVHGEQCSMTERRADDATREVNAWLKCEYLQEHVGDEFDG
VIAAVTSFGLFVELEDLYIEGLVHVTSLPGDYYNFDKSRQRLLGERSGRMFKLGGKVRVQ
VARVNLDDRKIDLEMIDTKPSKKDKAPKQGRDQKPRGKKKSGSSQGKSQKKPKGKGKTGL
RRRY
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagaaaggcaagatcactgaccctcacgccaagcgagaggccgccaaatacgaa
aaccctatcgccagtcgcgaggttatcctcgatgtgctgcgcgatgcgaacaagcccctg
aaccataaccagctggccaagaaattacagctggcgagtcacgaggatgcggaagccctg
cgcaaacgcctgcgcgcgatggagcgcgacggccaagtgatgtccgaccgcaagggcgcc
tatggcctggtcgacaagatgaacctcattcactgcaaggtgcagggccatcgcgacggc
tacggctttgccatgccgctgggcgagggcgacgacgtctatctcagcgcccggcagatg
cattttgtgttcgatggcgatgaggtgctggtgctgatcactggcgaggaccgccgcggt
cgcctcgagggccgggtggtggaagtgttgcagcgcggcgtgaccactgtcgtgggccgc
taccaggaagagagcggaattggtttcgtgattcccgacaacggccgcctcacgcaccag
tttctgattccgccgaaggaaaagagcggcgccaagaatggccagatcgtctccgcactg
atcaccgattatcccacccgtcagttgggcgcgaaggcttccatcactgagatcctgggc
gaccatatggacccgggtctggagatcgatgttgccattcgctcccacgagattccctgg
gagtggccggaagcggtgcagcgcgaggcggccagcctggaagacgagcccgctgaagaa
gacaagcgcaaccgcaaggatctgcgcaagctgccttttgtcactatcgacggtgaagat
gcccgcgacttcgacgacgcggtgtattgcgaaaagcggcgtggtggttggcgcctttat
gtggcgatcgccgatgtctcgcattatgtccgcccgggcatggcgctggatgaagaggcg
gccaatcgcggcaactcggtgtacttccccgagcgagtggtgcccatgctgccggaagcg
ctgtccaacggcctgtgctcactcaagccacaggtggaccgtctggcgatggtttgtgag
atggaactcaaccgcaccggcaagatgctgcgctacgagttctatgaggcggtgattcac
tctcacgcccggctgacttatacacaggtgggcgaggtgcttaacgagggctggcatgct
gatgtcgcacccgagcgcgtgcccgacctgctccttctgcaagagctttacaaggtgttg
cgcgcccagcgcgatacgcgcggcgccatcgatttcgacacggtggaaacccgcattatt
ttcgacgagcagaagaagatcgaatcgatcgtgccggtagtgcgcaacgatgcccacaaa
ctgattgaagaggcgatgctctgcgccaatgtggccgcagcgcgctttttcgaggccaac
cagctgccgattctgtatcgggtccacgagggtcccagcgaagagcggcttgagggcttg
cgcggtttcctcggtgaactggggctggacctgcccggcggcgccaaaccgacgccactg
gattaccagcacctgctggagcaggtggccgagcgcgacgatgtgcacgtgatccagact
atgttgctgcgctctctcagccaggcccagtaccagcccgagaacggtggtcatttcggc
ctgcactatgacgcctacgcgcacttcacttcgccgatccgccgctatccggatctgctt
gtgcatcgtggtatccgcagcctggtccgttcagacaagcccgccgagggtgtgttccgg
gtagcgggcgctgagcctattcccacccgccgtatcttcccctacgacgatgcggccatg
gcggtccacggtgagcagtgttccatgaccgagcgccgcgccgacgacgccacccgcgag
gtgaatgcctggctcaagtgtgagtacctgcaggagcatgtcggggatgagttcgatggg
gttatcgccgcggtgacgagttttggcctctttgtcgagttggaggacctctatatcgag
gggctggtgcacgtcacctccctgccgggcgattactacaacttcgataagagccgccag
cgcctgctcggcgagcgcagcggccgaatgttcaagctcgggggcaaggtgcgggtgcag
gtggcccgggtcaacctggacgatcgcaagatcgatctggaaatgatcgataccaagccg
tcgaagaaagacaaggcccccaagcagggccgggaccagaagcccaggggcaagaagaaa
tccggcagttcacagggtaagtcacagaagaagcccaagggcaaaggcaaaaccggcctg
cgccgccgctactag
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