Haliaeetus albicilla (white-tailed eagle): 104319965
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Entry
104319965 CDS
T08398
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hald
Haliaeetus albicilla (white-tailed eagle)
Pathway
hald03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hald00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104319965 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hald03021
]
104319965 (PCF11)
03019 Messenger RNA biogenesis [BR:
hald03019
]
104319965 (PCF11)
Transcription machinery [BR:
hald03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104319965 (PCF11)
Messenger RNA biogenesis [BR:
hald03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104319965 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CFIA_Pcf11
CID
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
104319965
NCBI-ProteinID:
XP_009920254
LinkDB
All DBs
Position
Unknown
AA seq
1707 aa
AA seq
DB search
MGLLALSVWITVKYLLPILRVVYEKTVDTRHVIYGCRSSLIWAVCQKSDLCSVKSRKTSI
QEAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTW
DDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVTS
GASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQG
SSTIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRMA
QHSSHAKDQSHRKEFPPNTTSQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSEA
KSKSPSPLKNKLPNAKDTKSQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRST
EKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSNRKRSRSRSPKA
RSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSNK
RNVKQEVRDPRRVKKAQEDRPQEAASQHSTKVSPDPKENAENWQGSKSGKRWKSGWEENK
NSQQNEEHQALGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRE
LLKKANERLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDNPTEEKCGLKKKPLLSD
AELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFDR
KEPFGERSRRHSPVSGTNRPFADNLSPLESRRRLEEQNTTKGARGSKNFDPYDSWGESDE
FRDALRQQGKSTTEFQKIDGDAICRFDNREDRQLLGQAGVREEPRSPFSERFKRTRYEDP
EKAPFPESPGSRFGSIEAKQRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAGS
SSRIDGPPGQAAMRFEGPLVGAGASQFDGPLAGAGGAGPLRFDGPPGQLAGALRFEGPPG
QVGGGGPLRFEGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEG
PHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEG
PHGQPMGPHGPSGGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDG
PLGRAGPRFDGCHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQR
FDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVDHPGQGYNGPSHGMQ
FQRPDIFDGSPGPNFNGPAGPGAQNFPLRAGHYFDEKGLQGPQYGNFNNMPMGSNQVSLM
SAQAGPYGQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSKT
DSTSAQVNETSAQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYSC
GMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKS
QFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNA
IRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETPESCDSPKVKEE
PGDTPTACAEESTPASTDIKTEPDESV
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgggactccttgctctgtccgtttggattacagtgaaatatttgttacctattctgcgt
gtagtttatgaaaagactgttgatactcgacatgtaatctacggctgcagaagttcacta
atttgggctgtttgccagaagtctgatttgtgttctgtgaaatccagaaaaacaagcatt
caggaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtcaag
aatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatttgt
gtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccacatgg
gatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcattagat
cctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtgaat
cctaaatttttaaataaatcgccagaggaatctactgcacctacctctgctgtcacttct
ggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaactg
ataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaatta
gagctggagctggaacaaactaaagcacagttggctgtatctcttagtgttcagcaagga
tcatctactatagcttcagttccagcaccttccaagcaacacatgtctcccacacctcac
atgacagttaaaccacctcatcagactgctgtgcaatccgaaaaaaacaaaccatcccca
agtcctccacttcatgatatcaaaatagtaaatagggatccccgacttaataggatggct
caacattcttctcatgctaaagatcaatctcataggaaagaatttccaccaaacacaact
agtcagtctgataccaaggcaaacaaaacaacacaggctgaaaaacaaaactcaacaaag
caagaaaaattgaaagcaagtgaaaaaacacaaaagaaagaacttgaccagtcagaagca
aaatctaaatcaccatcccctttgaaaaataagctacccaatgctaaagatactaaaagc
caggaatgtgaaagcacaaaagtatctgaaattagtaagcgggatccaagactgaaaaga
catcttcaagataagtcagagggcaaagaggaggaggtgaaagaaaagcggagaagtaca
gagaaaaaagaaaaagaggaacataagacatgtgaacatagaccagtaggcagcagaaat
aaagtgattaatggtgctgttcagaaacaagacacgactacagaggagtcagaaaaacag
ggtggaaaacaagggagatcaagtaatagaaaacggtcacgatcacgctctcctaaggca
cggtcaccatctacgcattctccaaaaagacgagagaggagatcaccgaaaagaagactt
aggagtttatctcccacttcatcaactcctaaaataggaaagatacgtcagataggccct
aagcagtctcatgttgaagaaggcacacaagcagcaagagatgaaagaaattctaataag
agaaacgttaaacaagaggtgcgagatccgaggagagtgaaaaaagcccaagaagacagg
ccccaagaagcagcaagccagcattctacaaaagtgtctcctgatccaaaggagaatgca
gaaaattggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaataaa
aactcacagcagaatgaagaacaccaagcacttggtaaatcccctcaccaaagacaccgg
gaaaactggcctgctggcaaaggaattttatcaccccgagcaccaaagcagcagcaccgc
ttaagtgtggatgccaatttacagatccccaaagaattgacatctgcaagcaagagggaa
ttacttaagaaggcaaatgaacgtttaacatctggtgaaataacacaagatgagttcctc
atggtagctcatcagatccgacagctgttccaatatcaggaaggaaagcacagatgtaat
gtctgggataaccctacagaagaaaaatgtggtttgaagaagaaacctcttctgtcggat
gcagaactaacatattatgaacataaggctaaactaaaacgaacacaagttcagcattca
ttgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacccgatgca
ttgctttctggaatagaatgtgagcaagcaaaagccaagcgtggagtacagttcgacaga
aaagaaccgtttggagaaagatcaaggagacactctcctgtaagtggcactaacagacct
tttgccgataacctctcaccacttgagagtcgacgaagacttgaggaacaaaatactact
aaaggagcaagaggttctaagaactttgatccttatgacagctggggagagtcagatgaa
tttagagatgctctcagacaacaggggaaaagcacaacagagttccagaaaatagacggt
gatgcaatctgcagatttgataatcgtgaagacagacagcttcttgggcaagctggtgtt
cgagaggaaccaagatcaccattcagtgaacgtttcaaaagaactagatatgaagatcca
gagaaagcaccgtttccggaaagtccaggatcaagatttggaagcattgaagcaaagcag
aggataagcgcactaatggaagacagacctctatttgatggctcacctagacaggctgct
gcaagggttggggtagatggacaaggaagtccttttgttgatggtcctgctgctggttca
agttccagaattgatgggccacctggacaggctgctatgagatttgaggggcctttggtg
ggggctggtgcctctcagtttgatggaccactagcaggagcagggggagctggaccccta
agatttgatgggccaccagggcagctcgcaggggccctgaggtttgaaggacccccagga
caggttggtggaggaggtccactgaggtttgagggacctcttgggcagataggtgggcct
ctgcgattcgaggggcctgcagggcagcctgtaggtggtcctagatttgaaggacctggg
gttggtctcaggtttgagggtccccgtggtcagccttcaggtggtctcaggtttgaggga
cctcacggtcaacctatggggcctcgaggtcaaccagggggtggtctcaggtttgaggga
ccccatggtcagcccttggggcctcatggtcaaccaggaggtggcctcaggtttgagggg
ccacatttacagccattggggccccatggtcaacctggaggtggcctcagatttgagggg
ccacatggtcagcctatggggccacatggaccatcaggtggtgggctcaggtttgagggg
ccacatggaccatcaggtggtgggctcagattggaaggaccacatggtcagccaggtgtg
ggtcctaggttgattgatggaccagtacaccagggagctggtggacttagatttgatggt
cctctgggtcgggccggtccgagatttgatggttgtcacgcagctggatttgatggtcag
cctggacagctgtctctcttgcaaagatttgatggaattcatggacagcctggtccaaga
tttgaaagggcacctggccagcaggcacaaccccgatttgatacagccatacctcaaaga
tttgatggacctcaccagccagcctctagatttgacttgccccttggccttcaaggtgca
cgttttgaaaatgtagctaaccatcctgcctcaagactagaaatgtcaccatatggacaa
ggtggtccgtttgtcgatcatcccggccagggctacaatggaccatctcatgggatgcag
ttccagagaccggatatatttgatggttcgcctggaccaaatttcaatggaccagctggc
ccaggagcacagaacttcccattgagagctggacattactttgatgaaaaaggtcttcag
ggtcctcaatatggaaacttcaataatatgccaatgggaagtaatcaggtttctctcatg
tctgctcaagcagggccttacggccaaggtcaacagtatttgccaaatcctggaagtttt
gttcagaaccctgcaggagcccttccacattcatatcctgataaccaccttggacagctt
gatgtcaatgaattgtttgctaaactgctgtcaacagggatcctcaaactgtcaaaaact
gactccacttcagcacaagtgaatgaaacatcagcccagccagctgctgaagaggaagat
gatgaccagaatgaagatcaaaatgttccagacctcactaacttcacagttgaagaactt
agacagcgctatgatagtgttataaatcgactgtacactggaattcagtgttactcatgt
ggaatgaggttcactacttcacagacagatgtttatgcagatcatttagattggcattat
cgtcagaaccggacagaaaaagatgttagcagaaaaattacacacagaagatggtactac
agtttaacagactggattgaatttgaagaaatagccgatctagaggagcgtgcaaaaagc
cagttttttgaaaaagctcatgaagaggtggtgttgaagacacaagaagctgcgaaagag
aaggagtttcagagtgtccctgctggaccagctggagcagttgagagctgtgaaatttgc
caagagcaatttgaacagtattgggatgaggaagaggaagagtggcacctgaagaatgct
atcagagtagatgaaaagatttaccatccatcttgctacgaagattaccaaaacacatca
tcatttgattgcacaccatctcccagcaagactcctgtagaaaatccactaaatataatg
ttgaacattgttaaacaagaaacaccagagtcctgcgactcacctaaagtcaaagaagaa
cctggtgacacccctactgcctgtgcagaagagagcacacctgcatctacagatatcaag
acagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
