Haloferax alexandrinus: G3A49_00320
Help
Entry
G3A49_00320 CDS
T06450
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hale
Haloferax alexandrinus
Pathway
hale03030
DNA replication
hale03410
Base excision repair
hale03420
Nucleotide excision repair
hale03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hale00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3A49_00320 (ligA)
03410 Base excision repair
G3A49_00320 (ligA)
03420 Nucleotide excision repair
G3A49_00320 (ligA)
03430 Mismatch repair
G3A49_00320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hale03032
]
G3A49_00320 (ligA)
03400 DNA repair and recombination proteins [BR:
hale03400
]
G3A49_00320 (ligA)
Enzymes [BR:
hale01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3A49_00320 (ligA)
DNA replication proteins [BR:
hale03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3A49_00320 (ligA)
DNA repair and recombination proteins [BR:
hale03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3A49_00320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3A49_00320 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3A49_00320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3A49_00320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
BRCT_2
DUF6317
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QIB76668
UniProt:
A0A6C0UUN8
LinkDB
All DBs
Position
62118..64217
Genome browser
AA seq
699 aa
AA seq
DB search
MSDADVDAESNPYLRDPPTEFEPAESLSREAAEEQAALLREAVREHDHRYYVAADPLVSD
AAYDALFSRLVALEGAFDLDTTNSPTNRVGGEPIDALETVEHVAPMLSIDQSTDADDLRE
FDERVRREVGAVDYVCEPKFDGLSVEVVYEDGEFVRAATRGDGRRGDDVSAQVKTIPTVP
LSLRGDHPERLAVRGEIYMPKSDFSDLNARRVEAGEDAFANPRNAAAGTLRNLDPSVVAD
RPLAVFFYDILDASARPDSQWAALDRLREWGLRVTDRIERAEDVAEAIDYRDRMQAARDD
LDYEIDGTVIKVDSRDARERLGEKSRSVRWAFAYKFPARHEVTTVRDIVVQVGRTGRLTP
VAILDPVDVGGVTVSRATLHNPDERAALGVAVGDRVRVKRAGDVIPQVVEVTEDGGGSYE
FPDECPVCGSAVDRDGPLAFCSGGLSCPAQREASIGHFAVKGAMDIDGLGEERVAQLVDA
GLVETVADLYDLTADDLTELEGWGETSAENLVAAVENAKHPSLDSFLVGLSIPEVGEATA
RGLAREFGSIEAFPIEADAEEDEFDAFEERLTTVPDVGETVARRVRDFFENADNRAVIRA
LLDRGVDPEPVESGGDELDGLTFVVTGTLAASRSDVTELVESHGGNVTGSVSGNTDYLVV
GENPGRSKRDDAEANDVPTLTETEFEALLAERGVAYPPE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgccgacgtcgacgccgagtcgaacccgtacctccgcgacccgccgaccgag
ttcgaacccgccgagtcgctctcgcgcgaggcggccgaagagcaggccgcactcctccgc
gaggccgtccgcgagcacgaccaccgctactacgtcgcggccgacccgctcgtctccgac
gcggcctacgacgcgctgttctcccgactcgtcgcgctcgaaggcgcgttcgacctcgac
acgaccaacagcccgacgaaccgcgtcggcggcgagcccatcgacgcgctggagacggtc
gaacacgtcgcgcccatgctctctatcgaccagagcaccgacgccgacgacctccgcgag
ttcgacgagcgcgtccgccgcgaggtcggcgcggtcgattacgtctgcgaacccaagttc
gacggcctctcggtcgaagtcgtctacgaagacggcgagttcgtccgcgcggccacccgc
ggcgacggccggcgcggcgacgacgtgagcgcgcaggtgaagacgattccgaccgttccc
ctctccctccgcggcgaccaccccgagcgactcgccgtccgcggcgagatttacatgccg
aagtccgacttcagcgacctcaacgcccggcgcgtcgaagccggcgaggacgccttcgcc
aacccccggaacgcggccgccgggacgctccgcaacctcgacccctcggtcgtcgccgac
cgcccgctcgcggtgttcttctacgacatcctcgacgcgagcgcgcgacccgacagccag
tgggcggcgctcgaccgcctgcgcgagtggggtctccgcgtcaccgaccgcatcgagcgc
gccgaagacgtggcggaggccatcgactaccgcgaccggatgcaggcggcccgcgacgac
ctcgactacgaaatcgacggcacggtcatcaaggtggactcgcgggacgcccgcgaacgg
ttgggcgaaaagagccgctcggtccgctgggcgttcgcctacaagttccccgcgcgccac
gaggtgacgaccgtccgcgacatcgtcgtgcaggtcgggcggacgggtcggctcacgccg
gtcgccatcctcgaccccgtggacgtgggcggcgtcaccgtctcccgggcgacgctccac
aaccccgacgagagagccgccctcggcgtcgcggtcggtgaccgcgtccgcgtcaaacgc
gccggcgacgtgattccgcaggtggtcgaggtcaccgaagacggcggcgggagctacgag
ttccccgacgagtgccccgtctgcgggagcgccgtggaccgcgacggcccgcttgcgttc
tgctcgggcgggctgtcgtgtccggcccagcgggaggcctccatcggccacttcgcggtc
aagggcgcgatggacatcgacggcctcggcgaggagcgcgtcgcccaactcgtcgacgcc
ggcctcgtcgagacggtcgccgacctctacgacctgacggccgacgacctcaccgagttg
gaggggtggggcgagacgagcgccgagaacctcgtggccgccgtcgagaacgccaagcac
ccctctctcgactcgtttctcgtcggcctgagcatccccgaggtgggcgaggcgaccgcc
cgcggcctcgcccgcgagttcgggtcaatcgaggcgttccccatcgaagccgacgccgaa
gaagacgagttcgacgcgttcgaggaacgcctgacgaccgtgcccgacgtgggcgagacg
gtggcgcgtcgcgtccgcgacttcttcgagaacgcggacaaccgcgccgtgattcgcgcg
ctgctcgaccgcggcgtcgaccccgaacccgtcgaatcgggcggcgacgaactcgacggc
ctgacgttcgtcgtgaccgggacgctcgcggcgagccgaagcgacgtgacggaactcgtc
gaatcccacggcggcaacgtcaccggctccgtctcgggcaacacggactacctcgtcgtc
ggggagaaccccggccggtcgaagcgcgacgacgcggaggcgaacgacgtgccgacgctc
acggaaaccgagttcgaggcgctgctcgcggagcgcggcgtggcgtatccgccggaatag
DBGET
integrated database retrieval system