KEGG   Halodesulfurarchaeum formicicum HTSR1: HTSR_1516
Entry
HTSR_1516         CDS       T04517                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
halh  Halodesulfurarchaeum formicicum HTSR1
Pathway
halh03030  DNA replication
halh03410  Base excision repair
halh03420  Nucleotide excision repair
halh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:halh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HTSR_1516
   03410 Base excision repair
    HTSR_1516
   03420 Nucleotide excision repair
    HTSR_1516
   03430 Mismatch repair
    HTSR_1516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:halh03032]
    HTSR_1516
   03400 DNA repair and recombination proteins [BR:halh03400]
    HTSR_1516
Enzymes [BR:halh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HTSR_1516
    6.5.1.6  DNA ligase (ATP or NAD+)
     HTSR_1516
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HTSR_1516
DNA replication proteins [BR:halh03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HTSR_1516
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HTSR_1516
DNA repair and recombination proteins [BR:halh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HTSR_1516
   NER (nucleotide excision repair)
    Other NER factors
     HTSR_1516
   MMR (mismatch excision repair)
    Other MMR factors
     HTSR_1516
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase IMPDH
Other DBs
NCBI-ProteinID: AOW80690
UniProt: A0A1D8S5R2
LinkDB
Position
1432790..1434460
AA seq 556 aa
MEYGRLVELYAELSATEANTEQTALIARTLTARPETVELLVTLLQGRPFVAWDDRDLGVS
SSLTRTAIAKATGHSEAQIEEWWRETGDLGSAAARAIENDRQQTLFGQSLTVEGVQDTLE
AIAAYDGAGSQERKVDAIAGLLSDAEPETAQYLVRTVLENLRIGVGEGTIRDAIAQAFLG
GSEADIAAVERAYQVTNDYRTVAAVARGSGVEGLAELEIQVGRPIAVMLAEKAESVRTGM
DRVAPDGPVLAEYKYDGMRAQVHVDGTDVTVFTRRLADVTAQFPDVVAAVQEHVDAEQAI
LEGEIVGYDPETGATLPFQTLSKRIKRKYDLQATKTEIPVTLLLFDAMYVEESLLEAPLT
ERLDRLESVLTESTQEIERARNHLSEDPEAIESLYEDALAAGQEGIMVKNPAATYQPGSR
VGYMMKVKPTLETLDLVVTRATYSEGRRSNQLGRLYLSCRDESGEFREVGRLSTGFTDEE
LATVTERLEPLIVETEGRDVVLDPELVLEVEFEEIQASPEYDSGYALRFPRFVGFRDDLA
VSDVDTLDRVERLYDQ
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggagtacggccgcctggtggagttgtacgcggagctctcggcgacagaagcgaacacg
gaacagacggcgctgatcgcacgcacgctgacagcgcggcccgagacagtcgaactgctc
gtcaccctcctgcagggccggccgttcgtggcctgggacgatcgggatctgggcgtctcc
tcgagtctgaccagaacggccatcgcgaaagcgaccggccacagcgaggcacagatcgag
gagtggtggcgcgagacgggcgacctggggagcgcggccgcgagagcgatcgaaaacgac
cggcaacagaccctcttcggccagtccctgaccgtcgagggagtccaggacaccctcgaa
gccatcgcggcctacgatggggcgggaagccaggaacggaaagtcgatgcgatcgccggg
ctgctctccgacgccgagcccgagacggcccagtacctcgtccggaccgtcctcgaaaac
ctccgcatcggcgtcggtgaggggacgatcagggacgcgatcgcccaggccttcctcggg
gggagcgaggccgacatcgcggctgtcgagcgggcctatcaggtcacgaacgattaccgg
acggtcgcagcagtcgcccgtggttcaggtgtggaaggattggcggaactcgaaatccag
gtcggccggccgatcgccgtgatgctcgcggagaaggccgaatcggtgcgcacgggaatg
gaccgtgtcgcccccgacgggcccgtcctcgcggagtacaagtacgacgggatgcgagcc
caggtccacgtcgacggaacggacgtcacggtctttacccggcggctggccgacgtcacg
gcgcagttcccggacgtggtcgcggccgtccaggaacacgtcgacgccgaacaggcaatt
ctggagggcgagatcgtggggtacgatcccgaaacgggggcgacccttccgttccagacc
ctctcgaagcgcatcaagcgcaagtacgacctgcaggccacgaaaacggagatcccggta
accctgctgctcttcgatgcgatgtacgtcgaggagtcgctacttgaggccccgctcacg
gaacggctcgaccggctcgaatcggttctcacggagtccacccaggagatcgaacgggcc
cgaaaccatctgagcgaggacccggaagccatcgaatcgctctacgaggacgcgttagcg
gcgggccaggagggcatcatggtgaagaacccggcggcgacctaccagcccgggagccgg
gtgggctacatgatgaaggtaaagcccacgctggagaccctcgatctggtggtgacccga
gcgacctacagcgaggggcggcggtcgaaccagctcggccggctctacctgagctgtcga
gacgagagcggcgaattcagggaagtcggccggctctcgacggggttcaccgacgaggaa
ctcgccaccgtcaccgagcgactggagccactgatcgtcgagaccgagggccgggacgtg
gtcctcgacccggaactcgtcctggaggtcgagttcgaggagatccaggcctcccccgag
tacgactcgggctatgcgcttcgcttcccgcggttcgtcgggttccgggacgacctcgcc
gtgagcgacgtggacacgctcgaccgggtcgaacggctctacgaccagtag

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