KEGG   Haloarcula sp. JP-L23: G9465_10350
Entry
G9465_10350       CDS       T06489                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
halj  Haloarcula sp. JP-L23
Pathway
halj03030  DNA replication
halj03410  Base excision repair
halj03420  Nucleotide excision repair
halj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:halj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    G9465_10350
   03410 Base excision repair
    G9465_10350
   03420 Nucleotide excision repair
    G9465_10350
   03430 Mismatch repair
    G9465_10350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:halj03032]
    G9465_10350
   03400 DNA repair and recombination proteins [BR:halj03400]
    G9465_10350
Enzymes [BR:halj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     G9465_10350
    6.5.1.6  DNA ligase (ATP or NAD+)
     G9465_10350
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     G9465_10350
DNA replication proteins [BR:halj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    G9465_10350
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     G9465_10350
DNA repair and recombination proteins [BR:halj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     G9465_10350
   NER (nucleotide excision repair)
    Other NER factors
     G9465_10350
   MMR (mismatch excision repair)
    Other MMR factors
     G9465_10350
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QIO22723
LinkDB
Position
2003297..2004949
AA seq 550 aa
MEFAAFADRAATIEAESADTAITECVTDLLADAGDDLATLARFVQGRVFPAHESTTLDIG
PRLCYEAIARAAGRNVSADDVEARLAERGEIGEVAASYDFGGQRGLAAFGGGGADALTVA
EVARELTDLAAVAGDGSQETKVDVLFGLFNRCDPDEARYLARLVLSEMRIGVGDGTVRDA
VAAAFDVPVDAVERALQVSNDYGYVAEVARDEGETGLDAIDLEVGRPVQAMLAQAGTVTG
ALEDWEQVAVEWKYDGARVQVHYDGEAVRLFSRNMEDVTDPLPEVVATVEDALDVPAILD
GEVVAVADDGSPLPFQEVLRRFRRKHDVAATREDVTVRLHLFDCLHVDGEDLLDASLRER
HDRLAALFDDDVVSDLWLSADADEIGEVEADALEAGHEGIMLKDPDAAYTPGKRGKNWRK
RKPDVETLDCVVTGAEWGEGRRANVLGTFELSVHTDDGYAQVGNVATGITDAELDDLTDR
LEPHVTAEDGRSVAIAPEIVFEVGYEEIQTSTTYDSGYALRFPRFLAVREDKTPADADSL
SRVERLAENA
NT seq 1653 nt   +upstreamnt  +downstreamnt
atggagttcgccgccttcgccgaccgcgccgcgactatcgaagccgagagtgccgacacc
gccatcaccgagtgcgtcaccgacctgctggccgacgccggggacgacctcgcgacgctg
gcccggttcgtgcagggccgcgtgttcccggcccacgagtcgacgaccctcgacatcggg
ccacgtctctgctacgaggcaatcgcccgcgccgccggccggaacgtgagcgccgacgac
gtggaggcgcgactcgcagagcggggggaaatcggcgaagtggccgcgagctacgacttc
ggcggccagcgaggactggcggcgttcggcggtggcggggcagacgcgctcaccgtagcc
gaggtggcacgcgaactgaccgacctcgccgccgtcgccggcgacggcagtcaggagacg
aaggtcgacgtcctcttcggcctgttcaaccgctgtgaccccgacgaagcgcgctatctc
gctcgactcgtcctctcggagatgcgcatcggcgtgggcgacgggacagttcgggacgcc
gtcgccgcggcgttcgacgtgccggtcgacgccgtcgaacgcgcgttgcaggtgtcgaac
gactacggctacgtcgccgaggtggcccgcgacgagggcgagacgggcctcgacgcaatc
gacctcgaagtcggccgtccggtgcaggcgatgctcgcacaggccggcaccgtcaccggt
gcgttggaggactgggagcaagtcgccgtcgagtggaagtacgacggcgctcgcgtgcag
gtccactacgacggcgaagccgtccgcctgttctcgcggaacatggaggacgtgaccgac
ccgcttcccgaagtcgtggccaccgtcgaggatgcactcgacgtgcccgccatcctcgac
ggcgaggtggtcgcggtggccgacgacggctctccgctcccgtttcaggaggtgttgcgg
cggttccggcggaaacacgacgtggcggcgacccgcgaagacgtcaccgtccgcctccac
ctgttcgactgtctgcacgtcgacggcgaggacttgctcgacgcgtcgctccgcgagcga
cacgaccgcctcgctgccctgttcgacgacgacgtcgtctcggacctgtggctctcggcc
gacgccgacgaaatcggcgaggtggaggccgacgcactcgaagccggccacgagggcatc
atgctgaaagaccccgacgcggcctacaccccgggcaagcgcgggaagaactggcggaaa
cgcaaacccgacgtcgagacgctcgactgtgtggtgaccggggccgagtggggagagggc
cgccgagcgaacgtcctcgggacgttcgaactgtcggtgcacaccgacgacggctacgca
caggtcggcaacgtcgccaccggcatcacggacgcggaactcgacgacctgaccgaccgc
ctcgaaccccacgtcaccgccgaggacggtcggagcgtcgcaatcgctcccgaaatcgtc
ttcgaggtgggctacgaggagatacagacctcgacgacgtacgactcgggttacgcgctt
cgcttcccgcgatttctggcggttcgtgaggacaagacgccagccgacgccgactcgctc
tcacgggtcgaacgcctcgccgagaacgcgtga

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