KEGG   Haloprofundus sp. MHR1: FCF25_14750
Entry
FCF25_14750       CDS       T05952                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
halm  Haloprofundus sp. MHR1
Pathway
halm03030  DNA replication
halm03410  Base excision repair
halm03420  Nucleotide excision repair
halm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:halm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FCF25_14750
   03410 Base excision repair
    FCF25_14750
   03420 Nucleotide excision repair
    FCF25_14750
   03430 Mismatch repair
    FCF25_14750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:halm03032]
    FCF25_14750
   03400 DNA repair and recombination proteins [BR:halm03400]
    FCF25_14750
Enzymes [BR:halm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FCF25_14750
    6.5.1.6  DNA ligase (ATP or NAD+)
     FCF25_14750
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     FCF25_14750
DNA replication proteins [BR:halm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    FCF25_14750
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     FCF25_14750
DNA repair and recombination proteins [BR:halm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FCF25_14750
   NER (nucleotide excision repair)
    Other NER factors
     FCF25_14750
   MMR (mismatch excision repair)
    Other MMR factors
     FCF25_14750
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QCJ48306
UniProt: A0A4D7HDV5
LinkDB
Position
2914332..2916101
AA seq 589 aa
MEFAAFADRAAAIEAESADLEIVSLLAETFLEAGPELPVVARFVQGRVFPAWRSATLDIG
PNLCYEAIARAAGRNVDASDVESKLAETGEIGAVAASYEFGGQRGLAAFGTGGAADLTVA
EVDETLRALAAATGSGSQDRKVDTLFGLFNRTSPEEARYLARVVLSEMRIGVGEGAVRDA
ISEAFEVPTESVERALQVSNDYGYVAEIARDDGVDGLNEVGLEVGRPVQAMLAQAGTVTD
ALDEWEDAVVETKYDGARVQIHRRRSDGGGGDDGDSDGDNDTGDESNAGDENDAGNENDA
ESAAVSLFSRNMEDVTDALPEIVEFVERAVDAPAILDGEVVAVDDEGDPLPFQEVLRRFR
RKHDVARMREEVTLRLHAFDCLHADGDDLLEEPLVTRHDRLADVVGDDAAVSTLLRSADA
DEIAAFEADALDAGHEGIMLKDPESTYSPGNRGRHWLKRKPDVETLDLVVTGAEWGEGRR
AQFLGTFLLSARDENGRYRTLGKVATGITDDQLAELTERLEPEIVSQDGREVELRPSTVF
EVGYEEIQRSPTYSSGYALRFPRFLSVREDKSPEDADALARVERLAETQ
NT seq 1770 nt   +upstreamnt  +downstreamnt
atggagttcgcggcgttcgcagaccgggcggcggctatcgaggcggagtcggcggacctc
gaaatcgtctcgctgttggcggagacgtttctggaggccgggccggagcttccggtcgtc
gcgcggttcgtccaggggcgcgtctttcccgcgtggcggtcggcgacgctcgacatcggt
ccgaatctctgttacgaggctatcgcgcgcgccgccggccggaacgtagacgcttcggac
gtggagtcgaaactcgccgagaccggcgaaatcggtgccgtcgccgccagttacgagttc
ggcggccagcggggtctcgccgcgttcgggaccgggggagcggccgacctgaccgtcgcc
gaagtagacgagacgctccgagcgctcgcggcggcgacggggtcggggagccaagaccgg
aaggtcgacaccctgttcggcctgttcaaccgcacgagcccggaggaggcgcgctatctc
gcgcgggtcgtcctctcggagatgcgcatcggcgtcggcgaaggggcggttcgagacgcg
atctcggaagcgttcgaggtgcccaccgagagcgtcgagcgcgcgctccaggtgtcgaac
gactacggttacgtcgccgaaatcgcccgcgacgacggcgtcgacggcctgaacgaggtg
ggtctggaagtcggccgaccggtgcaggcgatgctcgcgcaggccggtaccgtcaccgac
gctctcgacgagtgggaagacgccgtcgtcgagacgaagtacgacggcgcgcgggtccag
attcaccgtcgtcggtccgacggcggcggtggcgacgacggcgacagtgatggcgacaac
gataccggcgacgagagcaacgccggcgacgagaacgacgccggtaacgagaacgacgcc
gagtcggctgcggtgtcgctgttctcccgcaacatggaggacgtgacggatgccctcccc
gagattgtcgagttcgtcgaacgcgccgtcgacgcgcccgcgattctcgacggtgaagtc
gtcgccgtcgacgacgagggcgacccgctgcccttccaggaggtcctgcggcggttccgt
cgcaaacacgacgtcgcgcggatgcgcgaggaggtgacgctcaggttgcacgccttcgac
tgtctgcacgccgacggcgacgacttgctcgaagaaccgctcgtgacgcgtcacgaccgt
ctcgccgacgtcgtcggcgacgacgcggccgtctcgacgctgcttcgctcggccgacgcc
gacgagatagccgccttcgaggccgacgcgctcgacgcgggtcacgaaggcatcatgttg
aaagaccccgagtcgacgtactcgccgggcaaccgcgggagacactggctgaaacgcaaa
ccggacgtggagacgctcgacctcgtcgtcacgggcgcggagtggggcgaggggcggcgc
gcgcagtttttggggacgtttctgctgtcggcgcgcgacgaaaacggccggtaccgcacg
ctcgggaaggtcgccaccggcatcaccgacgatcaactcgccgagttgaccgaacgcctc
gaacccgaaatcgtctcccaggacggccgcgaggtggagcttcgaccctcgacggtgttc
gaggtcggctacgaggagatacagcggtcgccgacgtactcgtcggggtacgcgctgcgg
ttcccgcggttcctctcggtgcgggaggataaatcgcccgaagacgccgacgcgctcgcg
cgggtcgaacgactcgccgagacgcagtga

DBGET integrated database retrieval system