Halomonas sp. 1513: BWR19_07900
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Entry
BWR19_07900 CDS
T04761
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
halo
Halomonas sp. 1513
Pathway
halo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
halo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BWR19_07900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halo03400
]
BWR19_07900
Enzymes [BR:
halo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BWR19_07900
DNA repair and recombination proteins [BR:
halo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BWR19_07900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_22
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APX92859
UniProt:
A0A1P8R2I1
LinkDB
All DBs
Position
complement(1739284..1742745)
Genome browser
AA seq
1153 aa
AA seq
DB search
MPHFSPLDPPRPSGTRETRYWQRPHGSALALALARLAGDAPLLVITADTAEAQRLENDLA
FFADAPVMPFPDWETLPYDSFSPHQDIVSARLRTLRDLQQARHGIVLVPINTLMQRLPPV
DYIAGRVMTLAVGQQLDREGFRESLSRAGYRAVETVYEPGEYALRGALIDLFPMGSESPL
RIDLFDDEIDTLRHFDPDTQRSQDKVERVELLPAHEYSLSRSAIACFRDGFETLFDVDPR
QCPLYVDALKGIPSPGLEQYLPLFFEETATLFEHLAEGTRVATLPGVFEAAEHHWAAIES
RYENLGVDPTRPLLPPHRAFVPAAEVFGAIKRHPRVAMSEDPDHPHAHLSATQPPPTVAI
NARAQQPLAALQRFLAEHAAARVLFVAESRGRREAIEEQLAPLQLALPHVDDWHAFADGE
QRLAITEGGLDSGLALGDSDAAIRLAVITESELFGEVVRQSRRRAKATDDNELAVRHLAE
LHEGSPVVHQAHGVGRYLGLERLEAGGQAAEFLALEYADGAKLYVPVDSLHLISRYAGAS
DELAPLHKLGSETWDKAKRKAAEKIRDTAAELLDVYARREARVGFACDFPVEEYARFAGN
FPFEETPDQQAAIGAVIGDMTRPQPMDRVVCGDVGFGKTEVAMRAAFLAVHSGRQVVVLV
PTTLLAQQHYDNFRDRFADTAVQVELISRFTGGKGQAESLKRIEEGRADIVIGTHKLLSK
RMNFPNMGLLIIDEEHRFGVAQKERLKSLRAEVDILTLTATPIPRTLNMAMSGIRDLSII
ATPPARRLSVKTFVQQRNEAVVKEAILREILRGGQVYVLHNEVKSIETSAEKLRELVPEA
RVGVAHGQLPERSLERIMSDFYHKRFNVLVCSTIIETGIDVPSANTIIIERADKFGLAQL
HQLRGRVGRSHHQAYAYLLTPHPKAITKDAAKRLEAISQAEDLGAGFTLASHDMEIRGAG
ELLGDEQSGQMETIGYSLYMQMLDRAVKAIKAGKTPNIEAPLDQGVEISLNLPALIPDDY
MPDVQQRLIMYKRIASAEDEAALKELQVELVDRFGLLPAPLKTLMRQTRLRQRAERLGIS
RLEAGPQRGRAIFATGTAVDPMTLVTLIQKDPVHYRLDGADTLRFELEMETEETRFSVVE
GLLERLNRKTEAA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgccgcacttttcaccgctcgacccaccccgcccctccggcacccgcgagacgcgctac
tggcagcgcccccacggcagcgccctggcgctggccctggcgcgcctggccggcgatgcg
ccgctgctggtgatcaccgccgacaccgccgaggcccagcgcctggaaaacgacctggcg
ttctttgccgacgccccggtgatgccgttccccgactgggagacgctgccctacgacagc
ttctcgccgcaccaggacatcgtctcggcgcggctgcgcaccctgcgcgacctgcagcag
gcccgccacggcatcgtgctggtgccgatcaacaccctgatgcagcgcttgccaccggtg
gactatatcgccgggcgggtgatgaccctggccgtcggccagcagctcgaccgcgagggc
ttccgcgagagcctgtcgcgggccggctaccgcgcggtggagacggtctacgagccgggc
gagtatgcgctgcgcggtgcgctgatcgatctcttcccgatgggcagcgagtcgccgctg
cgcatcgacctgttcgacgacgagatcgacaccctgcgccacttcgatcccgacacccag
cgcagccaggacaaggtcgagcgtgtcgagctgctgccggcgcatgagtattcgctgtcg
cgcagcgccatcgcctgcttccgcgacggcttcgagacgctgttcgacgtcgatccgcgc
cagtgcccgctctacgtcgatgccctcaagggcatcccctcgccggggctcgagcagtac
ctgccgctgtttttcgaggagaccgcgacgctgttcgagcacctcgccgagggcacccgg
gtggccaccctgcccggcgtgttcgaggccgccgagcaccactgggcggccatcgagagc
cgctatgagaacctcggcgtcgacccgacgcgcccgttgctgccgccgcatcgcgccttc
gtgcccgccgccgaggtgttcggcgccatcaagcgccacccgcgggtggcgatgtccgaa
gacccggaccacccccacgcccacctctcggctacccagccgccgcccacggtggccatc
aacgcccgcgcccagcagccgctggcggcgctgcagcgcttcctcgccgagcatgccgcg
gcgcgggtgctgttcgtcgccgagtcccgcggtcgccgcgaggccatcgaggagcagctc
gctccgctgcagctcgccctgccccacgtcgacgactggcacgccttcgccgacggcgag
cagcgcctggcgatcaccgaaggcggcctcgactcgggcctggcgctgggcgacagcgac
gccgcgattcgcctggcggtgatcaccgagtcggagctgttcggcgaggtggtgcgccag
agccggcgacgcgccaaggccaccgacgacaacgagctggcggtacgccacctggccgaa
ctgcacgagggctcgccggtggtccaccaggcccacggcgtgggccgctacctgggcctg
gagcgcctcgaggccggcggccaggccgccgagtttctggccctcgagtacgccgacggc
gccaagctctacgtgccggtggacagcctgcacctgatctcgcgctacgccggcgccagc
gacgagctggcgccgctgcacaagctcggctcggagacctgggacaaggccaagcgcaag
gccgccgagaagatccgcgacaccgccgccgagctgctcgacgtctacgcccggcgcgag
gcgcgggtcggctttgcctgcgacttcccggtggaggagtacgcccgcttcgccggcaac
ttcccgttcgaggagacccccgaccagcaggcggcgatcggcgcggtgatcggcgacatg
acccgcccgcagccgatggaccgggtggtgtgcggcgacgtcggcttcggcaagaccgag
gtggcgatgcgcgccgccttcctcgccgtgcactccggccgccaagtggtggtgctggtg
cctaccaccctgctcgcccagcagcactacgacaacttccgcgaccgcttcgccgatacc
gcggtgcaggtcgagctgatctcgcgctttaccggcggcaagggccaggccgagtcgctg
aagcgcatcgaggagggccgcgccgacatcgtcatcggcacccacaagctgctctccaag
cgcatgaacttccccaacatgggcctgctgatcatcgacgaggagcaccgcttcggggtg
gcccagaaggagcgcctcaagagcctgcgcgccgaggtcgatatcctgaccctgaccgcc
acgccgatcccgcgcaccctcaacatggcgatgagcggcatccgcgacctgtcgatcatc
gccaccccgccggcgcggcggctgtcggtcaagaccttcgtccagcagcgcaacgaggcg
gtggtcaaggaggcgatcctgcgcgagatcctgcgcggcggtcaggtctacgtgctgcac
aacgaggtcaagagcatcgagaccagcgccgagaagctgcgtgagctggtgcccgaagcg
cgggtcggggtggcccacggccagctgccggagcgctcgctggagcgcatcatgtccgac
ttctaccacaagcgcttcaacgtgctggtgtgctcgacgatcatcgagaccggtatcgac
gtgcccagcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccagctg
caccagcttcgcggccgcgtggggcgcagccaccaccaggcctacgcctacctgctgacc
ccgcaccccaaggcgatcaccaaggatgccgccaagcgcctagaggcgatcagccaggcc
gaggatctcggcgccggcttcaccctggccagccatgacatggagattcgcggcgccggc
gagctgctcggcgacgaacagagcggccagatggaaaccatcggctatagtttgtatatg
cagatgctcgatcgtgcggtgaaggcgatcaaggccggcaagacgccgaacatcgaggcg
ccgctggaccagggggtggaaatcagcctgaatctgccggcgctgatccccgacgactac
atgcctgatgtgcagcagcgcctgatcatgtataaacgcattgccagcgccgaggacgag
gcagcactcaaggaactgcaggtcgaactggtagaccgtttcggcctgctgccggcaccg
ctcaagacactgatgcgccagacccggctgcgtcagcgcgccgagcggctgggcatttcg
cggctcgaggcggggcctcagcgcggccgggcgatatttgccaccggcaccgccgtcgac
ccgatgacgctggtcaccctgatacagaaggatccggttcactaccggctcgatggcgcc
gataccctgcgcttcgagctcgagatggaaaccgaagaaacgcgcttcagcgtggtcgaa
ggcctgctggagcgattgaaccgcaagaccgaggcggcttga
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