KEGG   Halarchaeum sp. CBA1220: EFA46_009500
Entry
EFA46_009500      CDS       T06674                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
halr  Halarchaeum sp. CBA1220
Pathway
halr03030  DNA replication
halr03410  Base excision repair
halr03420  Nucleotide excision repair
halr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:halr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EFA46_009500
   03410 Base excision repair
    EFA46_009500
   03420 Nucleotide excision repair
    EFA46_009500
   03430 Mismatch repair
    EFA46_009500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:halr03032]
    EFA46_009500
   03400 DNA repair and recombination proteins [BR:halr03400]
    EFA46_009500
Enzymes [BR:halr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EFA46_009500
    6.5.1.6  DNA ligase (ATP or NAD+)
     EFA46_009500
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     EFA46_009500
DNA replication proteins [BR:halr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    EFA46_009500
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     EFA46_009500
DNA repair and recombination proteins [BR:halr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     EFA46_009500
   NER (nucleotide excision repair)
    Other NER factors
     EFA46_009500
   MMR (mismatch excision repair)
    Other MMR factors
     EFA46_009500
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QLC34432
UniProt: A0A7D5E0W7
LinkDB
Position
complement(1786448..1788112)
AA seq 554 aa
MEFAEFAEHAAGIEAEPADLEVVSLVADLFAEADADLGVVARFVQGRVFPAYSERTLDVG
PSLCHEAIARAAGPNVDAADVEARLADEGDIGRVAASYDTGGQRGLGAFGATAGTTALTV
REVYDELAGLAAAEGAGSQDEKVATLFGLLSRCDGDAEARYLARLVLSEMRIGVGEGTVR
DAIAEAFDVDVAAVARALQVSNDYGLVAETAREEGAAGLADIHLEVGRPVQAMLAQAGSV
ADAIEAWETVAVETKFDGARVQLHHDPGGHTEVFSRNMEEVTAALPEVVEFAERHLDAPA
ILDGEVVAVAEDGSPLPFQEVLRRFRRKHDVERMREEVAVELRAFDCLHADGADLLDAPL
TERHDALAALLAGTDAVSDLLLSDDADDIEAFEADALEAGHEGVMLKDPESAYTPGKRGK
QWLKRKPDVETLDLVVTGAEWGEGRRASLLGTFLLSARTEDGYATIGKVATGISDDELAD
LTDRVEPHVVSEDGQTLDVDPHVVFEVGYEEIQRSPTYSSGYALRFPRFLAVRDDKTPES
ADSLERVERLVESQ
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggagttcgccgagttcgccgagcacgcggccggtatcgaggccgagcccgcggacctc
gaagtcgtgtcgctcgtcgccgacctcttcgcggaggcggacgccgacctcggggtcgtc
gcgcgcttcgtgcaggggcgcgtcttccccgcgtacagcgagcgcacgctcgacgtcggg
ccgagcctctgccacgaggcaatcgcgcgcgccgccgggccgaacgtcgacgcggcggac
gtcgaggcgcgtctcgcggacgagggcgacatcgggcgcgtcgccgcgagctacgacacc
ggcggccagcgcggcctcggcgcgttcggggcgacggccggaacgaccgccctcaccgtc
cgagaggtgtacgacgagctcgcgggactcgccgccgccgaaggcgccgggagccaggac
gagaaggtggcgacgctcttcggcctcctctcgcgctgcgacggcgacgccgaagcgcgc
tacctcgcgcgcctcgtcctctccgagatgcgcatcggcgtcggcgagggcaccgtccgg
gacgccatcgccgaggccttcgacgtcgacgtcgcggcggtcgcgcgcgccctccaggtg
tcgaacgactacggcctcgtcgcggagaccgcgcgcgaggagggcgccgccggcctcgcg
gacatccacctcgaggtgggccggcccgtgcaggcgatgctcgcgcaggcggggagcgtc
gcggacgccatcgaggcgtgggagaccgtcgccgtcgagacgaagttcgacggggcgcgc
gtccagctgcaccacgaccccggcggccacaccgaggtcttcagccggaacatggaggag
gtgacggccgcgctccccgaggtcgtggagttcgccgagcgccacctcgacgcccccgcg
atactcgacggcgaggtcgtcgccgtcgccgaggacgggagtccgctcccgtttcaggaa
gtgctcagacgattccgccggaagcacgacgtcgaacggatgcgcgaggaagtcgccgtc
gagctgcgggcgttcgactgcctgcacgcggacggcgcagacctcctcgacgcgccgctc
accgagcgccacgacgcgctcgcggccctgctcgcggggacggacgccgtctccgacctc
ctgctctcggacgacgccgacgacatcgaggcgttcgaggccgacgccctcgaagccggc
cacgagggcgtgatgctcaaggacccggagtcggcctacaccccgggcaagcgcgggaag
cagtggctgaagcgcaagcccgacgtcgagacgctcgacctcgtcgtgacgggcgcggag
tggggcgagggccgacgcgcctcgctcctcgggacgttcctcctctccgcgcgcaccgag
gacggctacgcgaccatcgggaaggtcgcgaccggcatctcggacgacgagctcgccgac
ctcaccgaccgcgtcgaaccccacgtcgtcagcgaggacggccagacgctcgacgtcgac
ccgcacgtcgtcttcgaggtgggctacgaggagatccagcgctcgccgacgtactcctcg
gggtacgcgctccgcttcccgcgcttcctcgccgtccgcgacgacaagacgccggagagc
gcggactcgctcgagcgcgtcgagcgcctcgtcgaaagccagtga

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