Halocella sp. SP3-1: D7D81_16710
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Entry
D7D81_16710 CDS
T05769
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hals
Halocella sp. SP3-1
Pathway
hals03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D7D81_16710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hals03400
]
D7D81_16710
Enzymes [BR:
hals01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D7D81_16710
DNA repair and recombination proteins [BR:
hals03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D7D81_16710
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AZO96099
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All DBs
Position
3496799..3497689
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AA seq
296 aa
AA seq
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MSTISINNFKVQLSNLDKVLWPKQGYTKGDLINYYIDIYPLIQDFLAQRPLSLKSYPDGI
NGKSFFQKNAPDYAPHWLSTYGIYSRHRKEAINWITVNKLADLVWVANRASIELHSWFST
INKPDEPSFAVFDLDPGDRSRFKDVIDIALVIKKIIDEMKLIAFLKTSGKSGLHIYVPIK
TGYKFTASKIFLKSIAEMVIRVKPGLATIEWRKKKRDGKVYIDYRQNGRGKTLPVPYSIR
PTANATISTPLNWDELTPGLSPEQFTLANIANRLGKKGDLWSDILQIKQSLPSYLL
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaataagcattaacaactttaaggttcaactcagcaatttagataaagttctc
tggcctaaacagggttatactaagggagaccttattaattactatatagatatatatccc
cttattcaagacttcctggctcaacgccccttgtcacttaaatcctatcctgatggaatt
aacggaaaatcattctttcaaaaaaatgcacctgactatgctccgcactggttgagtacc
tatggtatttactctagacatagaaaagaagccatcaactggataactgttaataaactg
gctgatttagtctgggtagctaatcgcgcctcaattgaattacacagctggttctccact
attaataaacctgatgaaccaagctttgctgtttttgacttagacccgggggatagatca
aggtttaaagatgtaatcgatattgccttagtcattaaaaaaataatagatgaaatgaaa
ctcattgcttttcttaagacatccggtaaatctggacttcatatctatgttccaatcaaa
accggctataagtttactgctagcaaaatttttctgaaatctatcgcagagatggttata
agagtaaaacccggtttagctaccattgaatggcgtaaaaagaaacgggatggaaaggta
tatatagattataggcaaaacggtagaggtaaaacactccctgtaccctactctatccgt
cccacagcaaatgctactatctctacaccacttaactgggatgaactaacccctgggctc
agcccagaacaatttacactggccaatattgctaatagattgggaaaaaaaggagacctc
tggtcagatattctgcaaatcaaacaaagtctacccagttatttgctttga
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