Ruania alkalisoli: IM660_07650
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Entry
IM660_07650 CDS
T06878
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
halt
Ruania alkalisoli
Pathway
halt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM660_07650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halt03019
]
IM660_07650
Messenger RNA biogenesis [BR:
halt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IM660_07650
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QOR72103
UniProt:
A0A7M1SZN6
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Position
1754778..1756463
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AA seq
561 aa
AA seq
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MSHPHPDLKPPGPLAPGALRIVPLGGLGEVGRNMAVLEFEGRLLVIDCGVLFPEDHQPGV
DLILPDFGYLEDRMDQVEAIVLTHGHEDHIGAVPYLLRLRKDIPLIGSKLSLAFVAAKLK
EHRIKPVLREVSEGQRRTFGVFDLEFVAVNHSIPDALAVAVRTPAGMVLHTGDFKMDQLP
LDSRITDLRAFARLGEEGVDLFMTDSTNAEVPGFTTSERDIGPVLDSVFAQAEGRIVVAS
FSSHVHRVQQVLDAADAHGRRVALVGRSMVRNMTIASELGYLNVPDGVLIDVKKIDDLPE
DRMVLMCTGSQGEPMAALSRIANRDHRVSVGPGDTVILASSLIPGNENAVFRIINGLIRL
GAKVVHQANARVHVSGHASAGELLYCYNIVRPKNVMPVHGEVRHLVANGALAVKTGVPPE
RVVLAEDGVVVDLVDGKAKIAGAVPCGYIYVDGSSVGGVTEAELKDRRILGEEGFISIFV
VVDSSSGEVVAGPELHVRGVAEGEDKLAAIVPEITKALTEAAAGGNADTHQLQQVVRRVV
GRFASSKLKRRPMIIPVVVES
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagccacccccaccctgacctcaagcccccgggtccgctggcaccgggcgcgcttcgg
atcgtcccgctcggcggtctcggcgaggtcgggcgcaatatggccgtgctggagttcgag
ggccgtctgctcgtcatcgactgtggcgtgctgttccccgaggatcaccagccgggcgtc
gatctcatcctgcccgacttcgggtacctcgaggatcggatggaccaggtcgaggcgatc
gtgctcactcacgggcacgaggaccacatcggtgccgtgccgtatctgctgcgactgcgc
aaggacatcccgctcatcggctcgaagttgtcgctggcgttcgtggccgccaagctcaag
gagcaccggatcaagccggtacttcgtgaggtttcggaggggcagcgccggactttcggg
gtgttcgatctcgagttcgtggccgtgaaccactcgatccccgatgcgctggccgtcgcg
gtgcgcacgccggcgggtatggtgctccacaccggtgacttcaagatggaccagctcccg
ctggactcacggatcacggacctgagggccttcgcccgcctcggcgaagagggtgtcgat
ctgttcatgaccgactcgacgaatgccgaggtgccgggtttcacgacctccgagcgcgac
atcggcccggtgctggactccgtgttcgcacaggcggagggccggatcgtggttgcttcc
ttctcctcgcacgtccatcgcgttcagcaggtgctggacgcggcagacgctcacggcagg
cgtgtggccctggtcggccggtcgatggtacggaacatgacgatcgcctccgagctcgga
tatctgaacgtgcctgacggagtgctgatcgacgtcaagaagatcgacgacctgcccgag
gaccgaatggtgctcatgtgcaccgggtctcagggtgagccgatggcggcgctgtcacgg
atcgcgaaccgggaccaccgagtctcggtcggcccgggggataccgtgatcctggcctcc
tccctcatccccgggaacgagaacgccgtcttccggatcatcaacgggttgatccgcctc
ggtgccaaggtcgtgcaccaggccaacgcccgtgtccacgtctccggacacgcctcagca
ggcgagctgctctactgctacaacatcgtgcgccccaagaacgtgatgccggtgcacggt
gaggtgcgtcatctcgtggcgaacggcgcgctcgccgtcaagaccggagtgccgcctgag
cgggtcgtgctcgccgaggacggcgttgtcgtcgacctggtggacggtaaggcgaagatc
gccggcgccgtcccgtgcgggtacatctacgtcgacggttcgtcggtcggaggtgtgacc
gaagccgagttgaaagatcgccggatcctcggcgaagaaggtttcatctccatcttcgtc
gtcgtcgactcctcgtccggagaggtcgtcgccggcccggagctgcacgttcgtggtgtc
gccgagggtgaggacaagctggctgcgatcgtgcctgagatcaccaaggcgctcaccgag
gctgccgcgggtgggaatgccgatacgcaccagttgcagcaggtggtgcgccgcgtcgtc
ggccgcttcgcctcgagcaagctgaagcggcgcccgatgatcattccggtggtcgtggag
tcctga
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