Ruania alkalisoli: IM660_11265
Help
Entry
IM660_11265 CDS
T06878
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
halt
Ruania alkalisoli
Pathway
halt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
halt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IM660_11265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halt03400
]
IM660_11265
Enzymes [BR:
halt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IM660_11265
DNA repair and recombination proteins [BR:
halt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IM660_11265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QOR69285
UniProt:
A0A7M1SP79
LinkDB
All DBs
Position
2542457..2545039
Genome browser
AA seq
860 aa
AA seq
DB search
MARTETIAQVDGRRLRLTNLGKVLYPATGTTKAEVIGYYSEIAAVMVPHCAGRPATRKRW
VNGVGTAADPGQVFFTKNLDSGTPDWVARADLAHSDHTNTYPLVNDRATLVWLAQMAALE
IHVPQWRFDSTGRPRHPDRIVFDLDPGPGVSLPEVAEVARWIRDVLAGLGWDCVPVTSGS
KGIHLYAPLDGGHDAEQIRGLARELAVSLEADHPDVVTAQMAKVARPGKVFIDWSQNHPN
KTTVAPYSLRGREHPTVAVPRTWTELEDPGLRQLEMTQVLERVAGQTGDFADPMAALERR
AHAMGTTGTSDIAGDALTSYRAMRDPARTPEPVPDVSPLPDGERVFVIQEHHASRLHWDL
RLADDGVLVSWAVPKGMPTDPTRQHLAVQTEDHPMEYLTFSGTIPRGEYGAGEMTIWDTG
TYEVLKWRVGAELIVALTGLPDGGLASSTGQTSTFALIHTGSRAETPEEKRHWLLHLMTG
RTHAGRSEDPAGRAAVPLAAGISTPDTGPDSGPGARSRALPTPVRRAPPVTTRAGDRAPE
GRPPAPMLASPGSPADVGPDWAMEMKWDGQRCIARVAGGTVRLWARSGRDITASYPELAE
LADAVKGDAVLDGEVVALTKDGRPSFELLQPRMQVSRESEARSLAARRPVHLMLFDVLEV
AGVPVTDEPYRRRREILSDQVRPSTRIQVPPAFEGDLDAAMKASRTWGLEGVVAKRPEGR
YLPGRRSSGWVKLKHTESVEVVVGGWRPGQGGRAGSVGGLLLGVPTAEGGWRYVGRVGTG
FSEKETRAWVERFAPLEISEPPFDDVPAPDARGAHWLRPEQVAEVEFGEWSRAGRLRHPR
WRGWRSDLSVADLRAPDGER
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcaccgagacgatcgcccaggtcgacgggcgccgcctgcgcctgaccaacctc
ggcaaggtcctctacccggccaccggcaccaccaaggcggaggtgatcgggtactactcc
gagatcgctgcggtgatggtcccgcactgcgcgggccggcccgcgacgcgcaaacggtgg
gtcaacggggtcggcaccgctgccgaccccggtcaggtgttcttcaccaagaacctcgac
tcggggacgccggactgggtggcacgggcggatctggcccactccgatcacaccaatacc
tacccgctggtcaacgatcgcgcgaccttggtgtggctggcgcagatggccgcactggag
attcacgtgccccagtggcgcttcgactccaccggccggccccgccatccggaccggatc
gtgtttgacctcgacccggggccgggcgtctcccttccggaggtggccgaggtggcgcgg
tggatccgcgatgtgctcgccggtctgggatgggactgtgtgcccgtcaccagcggctcg
aagggtattcacctgtatgccccgctggacggcggtcacgatgccgagcagatccggggg
ctggcccgcgagctcgcggtgagcctggaggcggaccatccggacgtcgtcactgcgcag
atggcgaaggtggcccggccgggcaaggtgttcatcgactggagtcagaaccacccgaac
aagaccacggtggcgccctactcgctgcgggggcgtgagcacccgacagtcgctgtgcca
cgcacctggaccgagctcgaggaccccgggttgcggcagctggagatgacccaggtgctt
gagcgggtcgccggccagaccggtgacttcgctgacccgatggcagcgctcgagcgtcgt
gcacatgcgatggggacaaccggcacgagcgacatcgcaggagatgcgctcaccagttac
cgcgccatgcgcgacccggcccgtacgcccgaaccggtacccgatgtctcaccactgccc
gatggagagcgggtgttcgtcatccaggaacaccacgccagccgtctgcactgggacctg
cggctggccgatgatggcgtgctggtcagctgggcggttccgaaggggatgccgacggac
ccgacgcggcagcatttggcggtccagaccgaggaccacccgatggagtacctgaccttc
tcgggcacgatcccgcgcggcgagtacggcgctggggagatgaccatctgggacaccggg
acctacgaggtgctcaagtggcgcgtgggcgctgagctgatcgttgccctcacggggttg
ccggacggtggactggcctccagcaccgggcagacgtcgaccttcgccctgatccacacc
ggctcccgggccgagacgcccgaggagaagcggcactggctcctgcacctgatgaccggc
cggacgcacgctggccggtcggaggatccggccgggcgcgccgctgtacctctcgctgcc
gggatctcgacgccggacacagggccggactcagggccgggcgctcggtcgcgcgctctg
cccaccccggtgcgacgcgcaccgcctgtaaccacgcgtgctggcgaccgggcgccggag
ggcagacctccggcacccatgctcgcctccccgggctcccctgccgacgtcggtcccgac
tgggcgatggagatgaaatgggatgggcagcgatgtatcgcgcgcgtagcgggcgggacc
gtgcggctgtgggctcgcagcggccgggacatcactgcctcctacccggagctggccgag
ctcgccgacgccgtcaagggtgatgccgtgctggacggtgaggtcgtcgcgctcaccaag
gacggcaggccgtccttcgaactcctccaaccgcggatgcaggtctcccgggagtcggag
gcacgatcgctcgccgcccgtcggccggtgcacctgatgctcttcgacgtgctcgaggtg
gccggggtgcccgtgaccgacgagccgtaccggcgccgccgggagatcctctccgatcag
gtgcggccaagcactcggattcaggtacctccggccttcgaaggcgatctggacgcggcg
atgaaggccagccgcacctggggcctggaaggcgtcgtggccaagcgacccgaggggcgg
tacctgccggggcgccgctcgagcgggtgggtcaagctcaagcacaccgagtccgtggag
gtggtcgtgggcggatggcgccccggtcagggcgggcgggcaggttccgtcggaggtctg
ctgctcggagtgccgacggcggagggcggctggcgctatgtgggccgggtgggcacgggc
ttcagtgagaaggagacgcgggcgtgggtggagcggtttgctcccctggagatcagtgag
ccaccgttcgacgacgtccccgcacccgatgcccgcggggcgcactggctgcgcccggag
caggtggccgaggtggagttcggcgagtggtcgcgtgccgggcggctgcgccatccccgg
tggcgagggtggcgttccgatctcagcgtcgccgatctgcgtgcccccgacggcgagcgc
tga
DBGET
integrated database retrieval system