KEGG   Ruania alkalisoli: IM660_11265
Entry
IM660_11265       CDS       T06878                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
halt  Ruania alkalisoli
Pathway
halt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:halt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IM660_11265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:halt03400]
    IM660_11265
Enzymes [BR:halt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IM660_11265
DNA repair and recombination proteins [BR:halt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IM660_11265
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: QOR69285
UniProt: A0A7M1SP79
LinkDB
Position
2542457..2545039
AA seq 860 aa
MARTETIAQVDGRRLRLTNLGKVLYPATGTTKAEVIGYYSEIAAVMVPHCAGRPATRKRW
VNGVGTAADPGQVFFTKNLDSGTPDWVARADLAHSDHTNTYPLVNDRATLVWLAQMAALE
IHVPQWRFDSTGRPRHPDRIVFDLDPGPGVSLPEVAEVARWIRDVLAGLGWDCVPVTSGS
KGIHLYAPLDGGHDAEQIRGLARELAVSLEADHPDVVTAQMAKVARPGKVFIDWSQNHPN
KTTVAPYSLRGREHPTVAVPRTWTELEDPGLRQLEMTQVLERVAGQTGDFADPMAALERR
AHAMGTTGTSDIAGDALTSYRAMRDPARTPEPVPDVSPLPDGERVFVIQEHHASRLHWDL
RLADDGVLVSWAVPKGMPTDPTRQHLAVQTEDHPMEYLTFSGTIPRGEYGAGEMTIWDTG
TYEVLKWRVGAELIVALTGLPDGGLASSTGQTSTFALIHTGSRAETPEEKRHWLLHLMTG
RTHAGRSEDPAGRAAVPLAAGISTPDTGPDSGPGARSRALPTPVRRAPPVTTRAGDRAPE
GRPPAPMLASPGSPADVGPDWAMEMKWDGQRCIARVAGGTVRLWARSGRDITASYPELAE
LADAVKGDAVLDGEVVALTKDGRPSFELLQPRMQVSRESEARSLAARRPVHLMLFDVLEV
AGVPVTDEPYRRRREILSDQVRPSTRIQVPPAFEGDLDAAMKASRTWGLEGVVAKRPEGR
YLPGRRSSGWVKLKHTESVEVVVGGWRPGQGGRAGSVGGLLLGVPTAEGGWRYVGRVGTG
FSEKETRAWVERFAPLEISEPPFDDVPAPDARGAHWLRPEQVAEVEFGEWSRAGRLRHPR
WRGWRSDLSVADLRAPDGER
NT seq 2583 nt   +upstreamnt  +downstreamnt
atggcccgcaccgagacgatcgcccaggtcgacgggcgccgcctgcgcctgaccaacctc
ggcaaggtcctctacccggccaccggcaccaccaaggcggaggtgatcgggtactactcc
gagatcgctgcggtgatggtcccgcactgcgcgggccggcccgcgacgcgcaaacggtgg
gtcaacggggtcggcaccgctgccgaccccggtcaggtgttcttcaccaagaacctcgac
tcggggacgccggactgggtggcacgggcggatctggcccactccgatcacaccaatacc
tacccgctggtcaacgatcgcgcgaccttggtgtggctggcgcagatggccgcactggag
attcacgtgccccagtggcgcttcgactccaccggccggccccgccatccggaccggatc
gtgtttgacctcgacccggggccgggcgtctcccttccggaggtggccgaggtggcgcgg
tggatccgcgatgtgctcgccggtctgggatgggactgtgtgcccgtcaccagcggctcg
aagggtattcacctgtatgccccgctggacggcggtcacgatgccgagcagatccggggg
ctggcccgcgagctcgcggtgagcctggaggcggaccatccggacgtcgtcactgcgcag
atggcgaaggtggcccggccgggcaaggtgttcatcgactggagtcagaaccacccgaac
aagaccacggtggcgccctactcgctgcgggggcgtgagcacccgacagtcgctgtgcca
cgcacctggaccgagctcgaggaccccgggttgcggcagctggagatgacccaggtgctt
gagcgggtcgccggccagaccggtgacttcgctgacccgatggcagcgctcgagcgtcgt
gcacatgcgatggggacaaccggcacgagcgacatcgcaggagatgcgctcaccagttac
cgcgccatgcgcgacccggcccgtacgcccgaaccggtacccgatgtctcaccactgccc
gatggagagcgggtgttcgtcatccaggaacaccacgccagccgtctgcactgggacctg
cggctggccgatgatggcgtgctggtcagctgggcggttccgaaggggatgccgacggac
ccgacgcggcagcatttggcggtccagaccgaggaccacccgatggagtacctgaccttc
tcgggcacgatcccgcgcggcgagtacggcgctggggagatgaccatctgggacaccggg
acctacgaggtgctcaagtggcgcgtgggcgctgagctgatcgttgccctcacggggttg
ccggacggtggactggcctccagcaccgggcagacgtcgaccttcgccctgatccacacc
ggctcccgggccgagacgcccgaggagaagcggcactggctcctgcacctgatgaccggc
cggacgcacgctggccggtcggaggatccggccgggcgcgccgctgtacctctcgctgcc
gggatctcgacgccggacacagggccggactcagggccgggcgctcggtcgcgcgctctg
cccaccccggtgcgacgcgcaccgcctgtaaccacgcgtgctggcgaccgggcgccggag
ggcagacctccggcacccatgctcgcctccccgggctcccctgccgacgtcggtcccgac
tgggcgatggagatgaaatgggatgggcagcgatgtatcgcgcgcgtagcgggcgggacc
gtgcggctgtgggctcgcagcggccgggacatcactgcctcctacccggagctggccgag
ctcgccgacgccgtcaagggtgatgccgtgctggacggtgaggtcgtcgcgctcaccaag
gacggcaggccgtccttcgaactcctccaaccgcggatgcaggtctcccgggagtcggag
gcacgatcgctcgccgcccgtcggccggtgcacctgatgctcttcgacgtgctcgaggtg
gccggggtgcccgtgaccgacgagccgtaccggcgccgccgggagatcctctccgatcag
gtgcggccaagcactcggattcaggtacctccggccttcgaaggcgatctggacgcggcg
atgaaggccagccgcacctggggcctggaaggcgtcgtggccaagcgacccgaggggcgg
tacctgccggggcgccgctcgagcgggtgggtcaagctcaagcacaccgagtccgtggag
gtggtcgtgggcggatggcgccccggtcagggcgggcgggcaggttccgtcggaggtctg
ctgctcggagtgccgacggcggagggcggctggcgctatgtgggccgggtgggcacgggc
ttcagtgagaaggagacgcgggcgtgggtggagcggtttgctcccctggagatcagtgag
ccaccgttcgacgacgtccccgcacccgatgcccgcggggcgcactggctgcgcccggag
caggtggccgaggtggagttcggcgagtggtcgcgtgccgggcggctgcgccatccccgg
tggcgagggtggcgttccgatctcagcgtcgccgatctgcgtgcccccgacggcgagcgc
tga

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