KEGG   Natronosalvus halobius: NGM15_03935
Entry
NGM15_03935       CDS       T08721                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
halv  Natronosalvus halobius
Pathway
halv03030  DNA replication
halv03410  Base excision repair
halv03420  Nucleotide excision repair
halv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:halv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NGM15_03935
   03410 Base excision repair
    NGM15_03935
   03420 Nucleotide excision repair
    NGM15_03935
   03430 Mismatch repair
    NGM15_03935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:halv03032]
    NGM15_03935
   03400 DNA repair and recombination proteins [BR:halv03400]
    NGM15_03935
Enzymes [BR:halv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NGM15_03935
    6.5.1.6  DNA ligase (ATP or NAD+)
     NGM15_03935
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NGM15_03935
DNA replication proteins [BR:halv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NGM15_03935
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NGM15_03935
DNA repair and recombination proteins [BR:halv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NGM15_03935
   NER (nucleotide excision repair)
    Other NER factors
     NGM15_03935
   MMR (mismatch excision repair)
    Other MMR factors
     NGM15_03935
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: USZ72474
LinkDB
Position
828453..830243
AA seq 596 aa
MDFVTFADHAATIEAEPADLETVAHVQSLLEAAGPDLQIVARFVQGRVFPAWDARKLDIG
PRTCYEAIARAAGTNVGPDNVEDAVAEVGEIGAVAASYEFGGQRGLGAFGGGGGDGDGGG
SQDGLTVATVSDTLTELAETDGSGSHDAKVDLLFSLFNRCEADEARYLARLVLSEMRIGV
GEGTVRDAIAEAFDVSADRVERALQVSNDYGRVAVVARDEGVEGLDALTLEVGRPVQVML
AQAGSVTDALEAWDETAVEWKYDGARVQLHYAPDGVGTTGASDGNSGDEHPTSRVFSRNM
EDVTDALPEVVEFAEATLEVPTILDGEVVAVDDDGEPLPFQEVLRRFRRKHDVAKAREDV
AVRPVFFDCLHVDGEDLLDVPLSERHGRLEAVLSPENAAETGASEASRDETPEGLSLLWL
TDDPDEIESIDADALEAGHEGIMLKDPDSTYSPGRRGKHWLKRKPDIETLDCVVTGAEWG
EGRRGTFLGTFLLSVRATDTSGDGAFETIGKVATGITDETLADLTERLEPYIRAEDGKDV
DLEPAVVFEVGYEEIQTSPTYSSGYALRFPRFLGIREDKTPSEADSLERVERLQSS
NT seq 1791 nt   +upstreamnt  +downstreamnt
atggacttcgtcacgttcgccgaccacgccgccaccatcgaggccgaacccgcggatctc
gagaccgtcgcccacgttcagtcgcttctcgaggcggccggcccggacctccagatcgtg
gcccgcttcgtccaggggcgggttttccccgcctgggacgcccgaaagctcgacatcggt
ccgcggacgtgctacgaggcgattgctcgcgcggctgggacgaacgtcggcccggacaac
gtagaggacgccgtcgccgaggtcggcgagatcggtgccgtcgccgcgagttacgagttc
ggcggccagcgggggctaggagcgttcggcggcggtggcggtgacggtgacggcggtggc
agccaggacggactcaccgtcgcgacggtgtccgacacgctcacggaactggccgaaact
gacgggtcgggcagccacgacgcgaaagtggacctcctgttctcgctgttcaaccggtgt
gaggccgacgaggcccgctacctcgctcgcctcgtcctctcggagatgcgtatcggcgtc
ggcgaggggaccgtccgcgacgctatcgccgaggcgttcgacgtctccgccgaccgcgtc
gaacgtgcgttgcaggtctcgaacgactacggccgcgtcgccgtcgtcgctcgagacgaa
ggggtggagggactggacgcgctcaccctcgaggtcggccgtccggtgcaggtgatgctc
gcccaggcggggagcgtgaccgacgcgctcgaggcctgggacgagacggccgtcgagtgg
aagtacgacggggcgcgcgtccagttgcactacgcgcctgatggcgtcgggacgacgggt
gcgtccgacgggaactcgggggacgaacacccgacgtcccgcgtcttctcgaggaacatg
gaggacgtgactgacgcgctcccggaagtcgtcgagttcgccgaggcgaccctcgaggtg
ccgacgatcctggacggcgaagtggtcgccgtcgacgacgacggagaaccgctcccgttc
caggaggtgctccggcgattccgtcgaaaacacgacgtggcgaaagcgcgcgaggatgtg
gccgttcggccggtcttcttcgactgtctccacgtcgacggcgaggacttgctcgacgtt
ccgctctcggagcgccacgggcgactcgaggcggtgctctcgcccgagaacgccgccgaa
acgggggcgtccgaagcgtccagggacgaaacgcccgagggcctttcccttctctggctc
accgacgaccccgacgagatcgaatcgatcgacgccgacgcgctcgaggccgggcacgag
gggatcatgctcaaggaccccgattcgacgtactcgccaggtcgtcgcggcaagcactgg
ctgaagcggaaacccgacatcgagacgctcgactgcgtcgtcacgggcgcggagtggggc
gagggtcggcggggaaccttcctcggcacattcttgctgtccgttcgggcgacggatacc
tccggagatggcgcgttcgagaccatcggcaaggtcgccacggggatcaccgacgagacc
ctcgcagacctgaccgagcgcctcgagccgtacattcgggccgaggacggcaaggacgtg
gacctcgagcccgcagtcgtgttcgaggtgggttacgaggagatccagacctcgccgacg
tacagttcggggtacgcactccggttcccccggtttctcgggatcagggaggacaagacg
ccgtccgaggcagattcactcgagcgcgtcgaacggctccagtcgtcgtag

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