KEGG   Halorussus limi: M0R89_13980
Entry
M0R89_13980       CDS       T08097                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
halx  Halorussus limi
Pathway
halx03030  DNA replication
halx03410  Base excision repair
halx03420  Nucleotide excision repair
halx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:halx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    M0R89_13980
   03410 Base excision repair
    M0R89_13980
   03420 Nucleotide excision repair
    M0R89_13980
   03430 Mismatch repair
    M0R89_13980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:halx03032]
    M0R89_13980
   03400 DNA repair and recombination proteins [BR:halx03400]
    M0R89_13980
Enzymes [BR:halx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     M0R89_13980
    6.5.1.6  DNA ligase (ATP or NAD+)
     M0R89_13980
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     M0R89_13980
DNA replication proteins [BR:halx03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    M0R89_13980
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     M0R89_13980
DNA repair and recombination proteins [BR:halx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     M0R89_13980
   NER (nucleotide excision repair)
    Other NER factors
     M0R89_13980
   MMR (mismatch excision repair)
    Other MMR factors
     M0R89_13980
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: UPV73643
UniProt: A0A8U0HSC2
LinkDB
Position
complement(2704879..2706672)
AA seq 597 aa
MQFGEFADIAAEIEELSADTAITEQVTRLFEGANDDLPVLARFVQGRVFPAWSSRTLDIG
PNYCYEAIARAAGTNVSADDVEDRLAEVGDIGEVAASYDFGGQQGLGAFTGGGAGGDSGA
SGANDLTVAEVADELDALAAAEGSGSQDKKIDVLFALFNRASATEARYLARLVLSEMRIG
VGEGTVRDATADAFDVPVEAVERALQVSNDYGEVARVAREEGADGLAALDLELGRPVQAM
LAQAGSVADALDDWDEVAVEWKYDGARVQIHYDPEGLAWASETAGSAAADASASDDREVA
VFSRNMEDVTDALPEIVEHVEANVDAPAILDGEVVATEDGDPRPFQEVLRRFRRKHDVAQ
AREEVELDLFAFDCLHAAGDDLLRTPLPERHDRLEGLLGAGASAGEASDDSGGDPSGLSS
LWITDDAEEIADIEAEALDAGHEGIMLKNPDSTYSPGRRGKNWLKRKPDVETLDLVVTGA
EWGEGRRASFLGTFLLSARVGEGEQFETLGKVATGITDEELADLTELLEPHVREQDGQEV
EIAPEVVFEVGYEEIQESPTYSSGYALRFPRFLGVREDKDPENADSLARVERLADQQ
NT seq 1794 nt   +upstreamnt  +downstreamnt
atgcaattcggggagttcgccgacatcgccgccgaaatcgaggagttgagcgccgacacc
gcgattaccgagcaggtcacgcgcctgttcgagggcgcgaacgacgacctccccgtgctg
gcccggttcgtgcagggccgcgtgttcccggcgtggtcctcgcggaccctcgacatcggg
ccgaactactgctacgaggccatcgcgcgggccgccggaaccaacgtctcggccgacgac
gtggaggaccgcctcgccgaggtgggcgacatcggcgaggtggccgcgagctacgacttc
ggcggccagcagggtctcggcgcgttcaccggcgggggcgcgggcggcgactccggcgcg
agcggcgccaacgacctgaccgtcgcggaagtcgccgacgaactcgacgctctcgccgcc
gccgaaggctccggcagtcaggacaagaagatagacgtcctgttcgcgctgttcaaccga
gcgagcgcgactgaggcccgctatctcgcgcgactcgtcctctcggagatgcgcatcggc
gtcggcgagggcaccgtccgggacgccaccgccgacgccttcgacgttcctgtcgaggca
gtcgagcgcgccctgcaggtgtcgaacgactacggcgaggtagctcgcgtcgcccgcgag
gagggcgcggacggtctcgcggcgctcgacctcgaactcggccgcccggtgcaggcgatg
ctcgcgcaggcagggagcgtcgccgacgcgctcgacgactgggacgaggtcgccgtcgag
tggaagtacgacggcgctcgcgtccagattcactacgacccggaggggttggcctgggcg
agcgaaaccgccggttccgccgcggcggacgcgagcgcgagcgacgaccgggaggtcgcc
gtcttctcgcggaacatggaggacgtgaccgacgcgctccccgaaatcgtcgaacacgtc
gaggcgaacgtggacgcgccggccatcctcgacggcgaagtcgtcgccaccgaggacggc
gacccccggccgtttcaggaggtcctgcggcgattccgccggaagcacgacgttgcccaa
gcccgcgaggaggtcgaactcgacctgttcgcgttcgactgcctccacgccgccggcgac
gacctactccggacgcccctgcccgagcgccacgaccgactggagggcctgctcggcgcc
ggcgcctccgcgggcgaagcgagcgacgactcggggggcgacccgtcgggcctctcgtcg
ctctggataaccgacgacgccgaggaaatcgccgacatcgaggccgaggccctcgacgcc
ggccacgagggcatcatgctcaagaaccccgactcgacctactcgcccggccgccggggg
aagaactggctcaagcgcaaacccgacgtggagacgctggacctcgtggtcacgggcgcg
gagtggggcgagggcaggcgcgcgagtttcctcggcacgttcctgctctcggcgcgcgtc
ggggagggtgaacagttcgagacgctcggcaaggtcgccaccggcatcaccgacgaggaa
ctcgcggacctgaccgaactgctggaaccccacgtccgcgagcaggacggacaggaggtc
gaaatcgcccccgaagtcgtcttcgaggtgggctacgaggagattcaggagtccccgacc
tactcgtcggggtacgccctgcggttcccccggttcttgggcgtccgcgaggacaaggac
cccgagaacgccgactcgctggcgcgcgtcgaacgactggccgaccagcagtag

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