Homarus americanus (American lobster): 121867948
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Entry
121867948 CDS
T07477
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121867948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hame03400
]
121867948
Enzymes [BR:
hame01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121867948
DNA repair and recombination proteins [BR:
hame03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121867948
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
LIG3_BRCT
DNA_ligase_IV
PTCB-BRCT
YfeC-like
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
121867948
NCBI-ProteinID:
XP_042224031
LinkDB
All DBs
Position
Unknown
AA seq
883 aa
AA seq
DB search
MGSSIIASLIPWSHVCRMLDKVQSSVRASKKEMLLKFIRQFRELLKKKLQEDPNAPDSFF
PVMRILLPALDRARGAYGVKERKLAELYIRILGLKKEGNDAQKLLHFRKPNSSAGSESGD
FAEVAYYVLKNRCPDKGDMTLHDVDLQLTSIAENYASKKHEEVERSLMTMLRSMTATEQK
WLMRVLLKDMRLGIGQGAIFNAWHPDAKDFYDVNNNLEKVCKTLRDPTIRLHEIEVSLFS
AFRPMLAQQAVLDKVETQMDHKPFYAETKYDGERSQIHKKGNVYKYFSRNAHEFTSNFGG
DRNSGLFTPYLHPLILPHVKEVILDGEMMGWSKTHKSIVSKGEHLDVKNLREEGDWHVCF
CVFDIVYLNGEVLSNLPLRDRIEKIKTVIKPLEGRVMLSTRTYVKSKEDVIRVLNEAIDK
REEGVVLKDPDSVYRPASRKGGWIKVKPEYVNSLVPELDLVIIGGYYGKGRHQGVLSHFL
LGVAVPSGVPGGKPREFHSFCRIGSGYTVAELGELVDKLSPHTKVGQQPKNVVVSREKPD
VWIDPVKSYIVQVRAAEIVKSDLYQAKVTLRFPRVEKVRYDKPWYDTLTTTELDQLVKEA
SGKLATKHYIDGGDEPSAKRKTQAKIEQPSLPLHFRPADLSNVVKKGEIFSGLEMCVMGG
SDDNTKQQLETLLVEHGGSFTQHPGQNTHCIVTNTMSIRVKNYSSKHNVVRPSWIEDCTK
SSRLLPWGPLDVMHLQKKEKSHMRDLFDIFGDSYTEPANKKSLKRVMDNMKKESWTPLSA
EEMCELDEKTCDPLETRGLFRLITAFFCNKEEHHLASLMLRLHGGSVTNTLDNATHVVTG
KESIQRPSEMGGRHLVMSDWIYDCVEKGKLFEPRYYVPKLMLD
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggggtccagcataatagcatcactcataccatggtcacatgtgtgccgcatgctcgac
aaggttcagtcttctgttcgagcttccaagaaagaaatgctactgaagtttatcagacag
ttccgggaacttcttaaaaagaaactgcaggaagacccaaatgcaccagacagcttcttc
cctgtgatgcggatattactaccagcactagaccgagcaagaggggcatatggtgtcaaa
gagcgcaagctggctgaactgtacatccgcattctgggtctgaagaaggagggcaatgat
gcacagaaactattgcattttcggaagcccaactcatcagctgggagtgaaagtggcgat
tttgctgaggtagcatactatgtgcttaagaaccgctgccctgacaaaggggacatgacc
ctgcatgatgttgacttgcagcttacatccattgcagagaattatgcatcaaagaagcat
gaggaggtggaacgttcattgatgacaatgctacgcagtatgacagcaactgagcagaag
tggctaatgcgtgttttgttgaaggacatgagacttggcattggacaaggtgctatcttc
aatgcttggcacccagatgccaaggatttttatgatgttaacaacaatcttgagaaggtc
tgcaaaactctccgtgatcccaccatacgtctccatgagattgaagtctcattgttttct
gcattccgtcccatgttagcacagcaggcagtgcttgacaaagtggaaacacaaatggac
cataaaccattttatgctgaaacaaaatatgatggggaaagatcacaaatccacaaaaag
ggaaatgtttacaagtatttttctcgaaatgcacatgagtttactagtaattttggtggt
gacaggaactcgggacttttcacaccataccttcacccactgattcttccacatgtaaag
gaagtcatcctggatggggagatgatgggctggagcaagacacacaagagtattgttagc
aaaggtgaacacctggatgtgaagaatttacgggaggagggtgactggcacgtctgcttc
tgtgtctttgatattgtttatctgaatggagaggtgctatctaacttgcctttacgtgac
cgaatagagaagatcaaaacagtcatcaagcccttggaaggccgagttatgctctctaca
agaacatatgtcaagtccaaggaggatgtgatcagagtactgaatgaggccatagacaag
agagaggaaggtgttgtgctcaaggacccagactcggtgtaccggccagcctctcgcaaa
ggtggatggatcaaagtcaagcctgagtacgtcaactctcttgtacccgagcttgacctg
gtgattattggagggtattatggaaagggccgacaccaaggtgtgctatcacatttcttg
cttggggttgccgtcccaagtggagttcctggtggcaagcctcgtgagttccactctttc
tgtcgcattggatcgggttatacagttgcagagcttggagagctggtagacaagcttagt
ccccacaccaaagtgggccagcaacctaaaaatgttgttgtatctagggagaagcctgat
gtgtggattgacccagtcaagtcttatattgtacaggttagggctgctgagattgtgaag
agtgacttgtaccaagctaaagtgacactgaggttccctagagttgaaaaagtacgatac
gacaagccttggtatgacaccctcaccactacagagctagaccagcttgtaaaggaagca
agtggcaagttggccacaaaacattacattgatggtggtgatgaaccctcagccaaacgc
aagacccaagccaagatagaacagccctcattgcctctacactttagaccagctgaccta
tcaaatgtggtgaagaaaggcgagatattttctggactggagatgtgtgtgatgggaggc
agtgatgacaacaccaaacaacagctagagacactgttagttgaacacggaggctcgttt
acccagcatcctggtcagaacacgcactgcattgtaacaaacactatgtctattcgtgta
aagaactactcatcgaaacacaatgttgtacgaccttcatggattgaagattgtacaaaa
agtagtcgtttgttaccgtggggtcccttggatgtaatgcatctgcagaaaaaggagaag
agccacatgagggatttatttgatatatttggtgatagctacacagagccagcaaataaa
aagagccttaagagggttatggataatatgaagaaagagtcatggactcctctgtcagca
gaagaaatgtgtgagctggatgaaaaaacatgtgacccactggagactcgaggtctcttc
cgactcattacagcttttttttgtaataaagaggagcatcatcttgcatcactcatgttg
cgacttcatggtggctctgtcactaacaccttggacaatgctactcatgtggttaccgga
aaagagagcatccaacggccaagtgagatgggtggcagacacttggtgatgtcagattgg
atttatgattgtgttgagaaaggtaagctgtttgagccaagatactacgtgcctaagctt
atgttagattaa
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