Homarus americanus (American lobster): 121880338
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Entry
121880338 CDS
T07477
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121880338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hame03041
]
121880338
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121880338
Spliceosome [BR:
hame03041
]
Complex A
U2 snRNP components
U2 related factors
121880338
Complex B
121880338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
121880338
NCBI-ProteinID:
XP_042243430
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MSRDSRRRRSRSRSRSPDRRRSRSRDRERDRDRDRGRTRRSRSRDRHRSRSRDRRRSRSR
DRRSRSRDRSRSRERDRDRRSRSRDRDRDRDRKRSRSRSRDRDRKRSKRSKSHSPPKIKL
LTHPPKPQEPVPAEPKDEEETGLDFDPSKIDKEEAEKRLEAEMQKRRERIEKWRAEKKKR
ELEAAKKEAEKGTLGANVPKVSIKAWSLEDDEEEEEGENKDGDGKQDEEDEVDPLDAFMS
GIQEEVRKINRVDIRGGVRRMPKSHTIGNEIIGMKKSVIIMGMAKRVNAKKKGELMEQNQ
DALEYSSEEEGEDLKDTMASINSKGKKELVKVDHTTIDYVPFRKDFYVEVPEIANLSKED
VDAYRAELEGIKVKGQGCPKPIKTWAQCGVSKRILDVLKKSNYEKPTPIQVQAIPAIMKG
RDVIGIAKTGSGKTLAFLLPMFRHIVDQQPLEDTDGPIAIIMTPTRELCMQIGKECKKFA
KNNLKVCCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANGGRVTNLRRVTYVVLDE
ADRMFDLGFEPQVMRIIDNIQPARQTVMFSATFPRQVEALAKKILTKPIEIMVGGRSVVC
KDVTQAVVILDEDQKFLKLLEILGQYYERGQIIIFVDKQENADSLFKDLLSHSYRALVLH
GGVDQIDRDSTILDFKAGRVPILVATSVAARGLDVKQLILVVNFDCPNHYEDYVHRCGRT
GRAGNKGWAYTFLTQDQPRYGGELIRAMELSDTPVPPDLQKFYDEYKHKMEGEGKKVKTG
GGFHGKGYKFDESEANFASEKKKFEKAALGLADSDDEDIEQDIDQQIESMLNTKRTVKEI
KVTPEVSSAPGDGLSGIPMGGPSASDKLELARKLAQRINLQHNIGKEAKGASQQAAEFIL
KGGAAMQPTISAKTVAEQMAQKLNNKLNYQPRDDQEEEEEATEETHHKYEEELEINDFPQ
QARWRVTSKEALAQISEYSEAGITVRGTFCPAGKNPPEGERKLFLAIESTSELAVSKAKA
EIIRLIREELVKLRTSAGPVKAQGRYKVL
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtgatagcaggcgcaggaggtcccggagtcggtcccgaagtccagaccgcaga
aggtcaagatctcgagacagggagagagatagagacagagatcggggtagaacccgacga
tctcgctccagagaccgtcacaggtcacgcagcagagatcggcgacggtctagatcccgg
gacagacgttcaagatccagggacaggtccaggtcacgcgagagagaccgggacaggagg
tcaaggtccagagacagagacagggacagggacaggaagaggagcaggagcaggtcacgg
gacagggacaggaagaggagcaagaggagcaagtcacactctcctcccaagatcaagctt
ttaactcacccccccaagcctcaggagccagtacctgctgaacccaaggatgaggaggag
acgggtcttgattttgatccctccaaaatagacaaggaagaggcagaaaaacgcctcgaa
gcagagatgcagaagagaagggaacgtattgagaagtggagagcagagaagaagaagcgg
gagttagaagcggccaagaaggaagcggagaaaggaaccctgggagccaacgttcccaaa
gtctccataaaagcttggagtcttgaagatgatgaagaagaggaggaaggagagaataaa
gatggtgacgggaaacaggacgaagaagatgaagtcgatcctctagatgccttcatgtcc
ggcatccaggaagaggtgcgcaagattaaccgggtggacattcggggaggtgtgagaaga
atgccgaagtcacacacaataggaaatgaaattataggaatgaagaagtcggttattatc
atgggtatggccaagagggttaacgccaagaagaagggggaactgatggagcagaatcag
gatgcattggagtactcgtcagaggaagaaggagaggatttgaaggacactatggcaagc
atcaactctaaagggaaaaaggagttagtgaaagtcgatcacacaactatcgactacgtg
cccttcagaaaggacttctacgtggaagtgccagagattgccaacctaagcaaggaagat
gttgacgcatacagagctgagctggagggcatcaaggtgaaaggtcaaggatgccctaaa
cctatcaagacctgggcccagtgtggagtgagtaagaggatcctggatgtactaaaaaag
agtaattatgaaaaaccaacacccattcaagtacaggctattccggccatcatgaagggc
agggatgttataggcattgccaagacgggatcggggaagactctggctttcctccttcct
atgttccgccacatcgtggaccagcagcccctggaagacacagatggccctattgctatc
atcatgacccccacaagagaactatgcatgcagattggtaaagaatgtaagaaatttgcc
aaaaacaacctgaaagtttgttgcgtctatggcggtacaggaatctcagaacagatagct
gaacttaaacgtggagcagaaattatcgtgtgtactccgggccggatgatcgacatgctg
gcggccaacggtggacgcgtcaccaacctccgcagagtgacttacgtagtgctggacgaa
gctgatcgcatgtttgacctgggatttgagcctcaggtaatgagaataattgacaatata
caacccgcccgtcagactgtcatgttctcggccaccttcccacgccaggtagaagctctg
gccaagaagatcctcacaaaacctattgaaattatggttggaggaagatctgtagtgtgc
aaggatgtgacacaggcagtagttattcttgacgaagaccagaagttcctcaagctgctt
gagatccttggtcagtattacgagcgcggccagatcatcatatttgtggacaagcaggaa
aatgcggactcattatttaaggacctactcagtcactcatacagggcacttgtgctgcat
ggaggcgttgaccagatagacagagacagtacaatcttggactttaaagctggaagagtg
ccaatcctggtagccacgtctgttgcagcgcgtggcctagacgtcaagcaactaattctt
gtggtcaattttgactgtcctaatcattatgaagattatgttcataggtgtggccgtact
ggtcgtgcaggtaataagggttgggcatataccttcctgactcaagaccaacctcgctac
ggtggtgaactcatccgtgctatggaactgtcagacactcccgtccctccagatcttcag
aaattctatgatgaatacaaacacaaaatggagggagaaggcaagaaggtgaaaactgga
ggaggtttccacggcaagggctacaagttcgacgaatctgaggcgaactttgcctcggag
aagaagaagttcgagaaggctgcgctgggcctggccgactctgatgacgaggacatagaa
caggacattgaccagcagatagagagtatgcttaacacaaagaggacggtcaaggagatc
aaggtgactcccgaggtgtcgtcagcccctggagatggcctgtctgggattcccatgggc
ggtccttctgcctccgacaagctggagttggctcgtaagttggcccaacgcatcaatctt
caacataatatcggcaaggaggccaagggcgccagtcaacaagctgccgagtttatcctg
aagggcggagcagccatgcaaccgaccatatcagccaagacagtagcagaacagatggca
caaaaactgaacaacaagttaaactaccaaccaagagacgaccaggaggaggaggaggag
gctacggaggaaacccaccacaagtacgaggaggaactggagatcaacgacttcccacag
caggcgaggtggcgtgttactagtaaggaagccttggcccaaatttctgaatattctgag
gctggaatcactgtcagaggaacattctgccctgcaggtaaaaatccaccagagggggaa
cgcaagctgttcttggctattgaatctacatctgagttagctgtgtcaaaggcaaaggct
gaaattattcgacttataagagaagaacttgtaaaacttaggacgagtgctggtcctgtt
aaggcccagggcagatacaaagttctttag
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integrated database retrieval system
